dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0052301
Uniprot Accession G3V9M1; G3V9M1_RAT;
Genbank Protein ID NP_001100263.2; XP_006257405.1;
Genbank Nucleotide ID NM_001106793.2; XM_006257343.2;
Protein Name DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 (Predicted), isoform CRA_b
Protein Synonyms/Alias
Gene Name Ddx23
Gene Synonyms/Alias Ddx23_predicted;rCG_50574;
Organism Rattus norvegicus(Rat)
NCBI Taxa ID 10116
Functional Description
(View all)
Phosphorylation Sites
dbPAF PTMs: 6
PositionPeptidesSourceReferences ( PMIDs )
14DKKDRDASPKEERKRPhosphoSitePlus;curated22135298; 23712012; 21630457
22PKEERKRSRTPERDRPhosphoSitePlus22135298
24EERKRSRTPERDRDRPhosphoSitePlus22135298
106DKDRKRSSLSPGRGKPhosphoSitePlus;curated22135298; 23712012; 21630457
108DRKRSSLSPGRGKDFPhosphoSitePlus;curated22135298; 23712012; 21630457
760RTGRAGKSGVAITFLcurated23353032
Sequence
(Fasta)
MAGELADKKD RDASPKEERK RSRTPERDRD RDRDRKSSPS KDRKRHRSRD RRRGGSRSRS 60
RSRSKSTERE RRHKERERDK ERDRSKKERE RDKDGHRRDK DRKRSSLSPG RGKDFKSRKD 120
RDSKKGDEDE HGDKRPKIQP LSLEELLAKK KAEEEAEAKP KFLSKAEREA EALKRRQQEV 180
EERQKMLEEE RKKRKQFQDL GRKMLEDPQE RERRERRERM ERETNGNEDE EGRQKIREEK 240
DKSKELHAIK ERYLGGIKKR RRTRHLNDRK FVFEWDASED TSIDYNPLYK ERHQVQLLGR 300
GFIAGIDLKQ QKREQSRFYG DLMEKRRTLE EKEQEEARLR KLRKKEAKQR WDDRHWSQKK 360
LDEMTDRDWR IFREDYSITT KGGKIPNPIR SWKDSSLPPH ILEVIDKCGY KEPTPIQRQA 420
IPIGLQNRDI IGVAETGSGK TAAFLIPLLV WITTLPKIDR IEESDQGPYA IILAPTRELA 480
QQIEEETIKF GKPLGIRTVA VIGGISREDQ GFRLRMGCEI VIATPGRLID VLENRYLVLS 540
RCTYVVLDEA DRMIDMGFEP DVQKILEHMP VSNQKPDTDE AEDPEKMLAN FESGKHKYRQ 600
TVMFTATMPP AVERLARSYL RRPAVVYIGS AGKPHERVEQ KVFLMSESEK RKKLLAILEQ 660
GFDPPIIIFV NQKKGCDVLA KSLEKMGYNA CTLHGGKGQE QREFALSNLK AGAKDILVAT 720
DVAGRGIDIQ DVSMVVNYDM AKNIEDYIHR IGRTGRAGKS GVAITFLTKE DSAVFYELKQ 780
AILESPVSSC PPELANHPDA QHKPGTILTK KRREETIFA
Keyword

KW-0067--ATP-binding
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0347--Helicase
KW-0378--Hydrolase
KW-0547--Nucleotide-binding
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR011545--DEAD/DEAH_box_helicase_dom
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000629--RNA-helicase_DEAD-box_CS
IPR014014--RNA_helicase_DEAD_Q_motif

PROSITE

PS00039--DEAD_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS51195--Q_MOTIF

Pfam

PF00270--DEAD
PF00271--Helicase_C

Gene Ontology

GO:0071013--C:catalytic step 2 spliceosome
GO:0070062--C:extracellular exosome
GO:0005739--C:mitochondrion
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0005886--C:plasma membrane
GO:0005682--C:U5 snRNP
GO:0005524--F:ATP binding
GO:0004004--F:ATP-dependent RNA helicase activity
GO:0044822--F:poly(A) RNA binding
GO:0010501--P:RNA secondary structure unwinding
GO:0000375--P:RNA splicing, via transesterification reactions