dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0051828
Uniprot Accession F6ZDS4; TPR_MOUSE; Q8R4A0; Q921B9;
Genbank Protein ID NP_598541.3;
Genbank Nucleotide ID NM_133780.3;
Protein Name Nucleoprotein TPR
Protein Synonyms/Alias NPC-associated intranuclear protein;Translocated promoter region and nuclear basket protein;
Gene Name Tpr
Gene Synonyms/Alias
Organism Mus musculus(Mouse)
NCBI Taxa ID 10090
Functional Description
(View all)
Component of the nuclear pore complex (NPC), a complex required for the trafficking across the nuclear envelope. Functions as a scaffolding element in the nuclear phase of the NPC essential for normal nucleocytoplasmic transport of proteins and mRNAs, plays a role in the establishment of nuclear-peripheral chromatin compartmentalization in interphase, and in the mitotic spindle checkpoint signaling during mitosis. Involved in the quality control and retention of unspliced mRNAs in the nucleus; in association with NUP153, regulates the nuclear export of unspliced mRNA species bearing constitutive transport element (CTE) in a NXF1- and KHDRBS1-independent manner. Negatively regulates both the association of CTE-containing mRNA with large polyribosomes and translation initiation. Does not play any role in Rev response element (RRE)-mediated export of unspliced mRNAs. Implicated in nuclear export of mRNAs transcribed from heat shock gene promoters; associates both with chromatin in the HSP70 promoter and with mRNAs transcribed from this promoter under stress-induced conditions. Plays a limited role in the regulation of nuclear protein export. Modulates the nucleocytoplasmic transport of activated MAPK1/ERK2 and huntingtin/HTT and may serve as a docking site for the XPO1/CRM1-mediated nuclear export complex. Plays also a role as a structural and functional element of the perinuclear chromatin distribution; involved in the formation and/or maintenance of NPC-associated perinuclear heterochromatin exclusion zones (HEZs). Finally, acts as a spatial regulator of the spindle-assembly checkpoint (SAC) response ensuring a timely and effective recruitment of spindle checkpoint proteins like MAD1L1 and MAD2L1 to unattached kinetochore during the metaphase-anaphase transition before chromosome congression. Its N-terminus is involved in activation of oncogenic kinases (By similarity).
Phosphorylation Sites
dbPAF PTMs: 57 (View all)
PositionPeptidesSourceReferences ( PMIDs )
209IRTNERLSQEVEYLTcurated25338131
453EEELAAMSPTAAAVAPHOSIDA;PhosphoSitePlus;curated21081558; 22135298; 21183079; 25521595; 25338131
455ELAAMSPTAAAVAKIPhosphoSitePlus22135298
596VIRDEEVSSADISSSPhosphoSitePlus;curated22135298; 25338131
597IRDEEVSSADISSSSPhosphoSitePlus;curated22135298; 25338131
693DMYRILLSQTTGMAIPhosphoSitePlus22135298
705MAIPLQASSLDDISLPhosphoSitePlus22135298
706AIPLQASSLDDISLLPhosphoSitePlus22135298
715DDISLLSTPKRSSTSPhosphoSitePlus22135298
719LLSTPKRSSTSQTVScurated25266776; 23684622; 25338131
720LSTPKRSSTSQTVSTcurated23684622; 25338131
721STPKRSSTSQTVSTPPhosphoSitePlus22135298
722TPKRSSTSQTVSTPAPhosphoSitePlus;curated22135298; 23684622; 25338131
724KRSSTSQTVSTPAPEcurated23684622; 25338131
726SSTSQTVSTPAPEPVcurated25266776; 23684622; 25338131
727STSQTVSTPAPEPVIPhosphoSitePlus;curated22135298; 25266776; 23684622; 25338131
1044EQYRAMVTSLEDSLNPhosphoSitePlus22135298
1221DEVSKSVSRCEDLEKPHOSIDA21081558
1259VQAPLNVSLNEEGKSPHOSIDA;PhosphoSitePlus;UniProt;curated21081558; 22135298; 19144319; 21183079; 25266776; 21743459;
1536AMETSTQSSGDHQEQPhosphoSitePlus22135298
Sequence
(Fasta)
MTSGGSASRS GHRGVPMTSR GFDGSRRGSL RRAGARETAS EAADGAAPAA GLRASPCSLA 60
SPSAAAAVAA IPADMAAVLQ QVLERPELNK LPKSTQNKLE KFLAEQQSEI DCLKGRHEKF 120
KVESEQQYFE IEKRLSQSQE RLVTETRECQ NLRLELEKLN NQVKVLTEKT KELETAQDRN 180
LGIQSQFTRA KEELEAEKRD LIRTNERLSQ EVEYLTEDVK RLNEKLKESN TTKGELQLKL 240
DELQASDVAV KYREKRLEQE KELLHNQNSW LNTELKTKTD ELLALGREKG NEILELKCNL 300
ENKKEEVLRL EEQMNGLKTS NEHLQKHVED LLTKLKEAKE QQASMEEKFH NELNAHIKLS 360
NLYKSAADDS EAKSNELTRA VDELHKLLKE AGEANKTIQD HLLQVEESKD QMEKEMLEKI 420
GKLEKELENA NDLLSATKRK GAILSEEELA AMSPTAAAVA KIVKPGMKLT ELYNAYVETQ 480
DQLLLEKQEN KRINKYLDEI VKEVEAKAPI LKRQREEYER AQKAVASLSA KLEQAMKEIQ 540
RLQEDTDKAN KHSSVLERDN QRMEIQIKDL SQQIRVLLME LEEARGNHVI RDEEVSSADI 600
SSSSEVISQH LVSYRNIEEL QQQNQRLLFA LRELGETRER EEQETTSSKI AELQHKLENS 660
LAELEQLRES RQHQMQLVDS IVRQRDMYRI LLSQTTGMAI PLQASSLDDI SLLSTPKRSS 720
TSQTVSTPAP EPVIDSTEAI EAKAALKQLQ EIFENYKKEK IDSEKLQNEQ LEKLQEQVTD 780
LRSQNTKIST QLDFASKRYE MLQDNVEGYR REITSLQERN QKLTATTQKQ EQIINTMTQD 840
LRGANEKLAV AEVRAENLKK EKEMLKLSEV RLSQQRESLL AEQRGQNLLL TNLQTIQGIL 900
ERSETETKQR LNSQIEKLEH EISHLKKKLE NEVEQRHTLT RNLDVQLLDT KRQLDTEINL 960
HLNTKELLKN AQKDIATLKQ HLNNMEAQLA SQSTQRTGKG QPGDRDDVDD LKSQLRQAEE 1020
QVNDLKERLK TSTSNVEQYR AMVTSLEDSL NKEKQVTEEV HKNIEVRLKE SAEFQTQLEK 1080
KLMEVEKEKQ ELQDDKRKAI ESMEQQLSEL KKTLSTVQNE VQEALQRAST ALSNEQQARR 1140
DCQEQAKIAV EAQNKYEREL MLHAADVEAL QAAKEQVSKM TSIRQHLEET TQKAESQLLE 1200
CKASWEERER VLKDEVSKSV SRCEDLEKQN RLLHDQIEKL SDKVVTSMKD AVQAPLNVSL 1260
NEEGKSQEQI LEILRFIRRE KEIAETRFEV AQVESLRYRQ RVELLERELQ ELQDSLNVER 1320
EKVQVTAKTM AQHEELMKKT ETMNVVMETN KMLREEKERL EQNLQQMQAK VRKLELDILP 1380
LQEANAELSE KSGMLQAEKK LLEEDVKRWK ARNQQLINQQ KDPDTEEYRK LLSEKEIHTK 1440
RIQQLNEEVG RLKAEIARSN ASLTNNQNLI QSLREDLSKA RTEKEGIQKD LDAKIIDIQE 1500
KVKTITQVKK IGRRYKTQFE ELKAQQNKAM ETSTQSSGDH QEQHISVQEM QELKDTLSQS 1560
ETKTKSLEGQ VENLQKTLSE KETEARSLQE QTVQLQSELS RLRQDLQDKT TEEQLRQQMN 1620
EKTWKTLALA KSKITHLSGV KDQLTKEIEE LKQRNGALDQ QKDELDVRMT ALKSQYEGRI 1680
SRLERELREH QERHLEQRDE PQEPTNKAPE QQRQITLKTT PASGERGIAS TSDPPTANIK 1740
PTPVVSTPSK VTAAAMAGNK STPRASIRPM VTPATVTNPT TTPTATVMPT TQVESQEAMQ 1800
SEGPVEHVPV FGNASGSVRS TSPNVQPSIS QPILTVQQQT QATAFVQPTQ QSHPQIEPTN 1860
QELSPNIVEV VQSSPVERPS TSTAVFGTVS ATPSSSLPKR TREEEEDSTM EAGDQVSEDT 1920
VEMPLPKKLK MVTPVGTEEE VMAEESTDGE AETQAYNQDS QDSIGEGVTQ GDYTPMEDSE 1980
ETSQSLQIDL GPLQSDQQTT SSQDGQGKGD DVIVIDSDDE DDDEENDGEH EDYEEDEDDD 2040
DDEEDDTGMG DEGEDSNEGT GSADGNDGYE ADDAEGGDGT DPGTETEESM GGAESHQRAA 2100
DSQNSGEGNT SAAESSFSQE VAREQQPTSA SERQTPQAPQ SPRRPPHPLP PRLTIHAPPQ 2160
ELGPPVQRIQ MTRRQSVGRG LQLTPGIGGM QQHFFDDEDR TVPSTPTLVV PHRTDGFAEA 2220
IHSPQVAGVP RFRFGPPEDM PQTSSSHSDL GQLASQGGLG MYETPLFLAH EEESGGRSVP 2280
TTPLQVAAPV TVFTESTTSD ASEHASQSVP MVTTSTGTLS TTNETAAGDD GDEVFVEAES 2340
EGISSEAGLE IDSQQEEEPV QASDESDLPS TSQDPPSSSS VDTSSSQPKP FRRVRLQTTL 2400
RQGVRGRQFN RQRGISHAMG GRGGINRGNI N 2432
Keyword

KW-0007--Acetylation
KW-0131--Cell cycle
KW-0132--Cell division
KW-0137--Centromere
KW-0158--Chromosome
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0995--Kinetochore
KW-0472--Membrane
KW-0498--Mitosis
KW-0509--mRNA transport
KW-0906--Nuclear pore complex
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-0653--Protein transport
KW-0656--Proto-oncogene
KW-1185--Reference proteome
KW-0811--Translocation
KW-0813--Transport

Interpro

IPR015866--Ser-tRNA-synth_1_N
IPR012929--TPR/MLP1

PROSITE
Pfam

PF07926--TPR_MLP1_2

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005868--C:cytoplasmic dynein complex
GO:0019898--C:extrinsic component of membrane
GO:0000776--C:kinetochore
GO:0072686--C:mitotic spindle
GO:0005635--C:nuclear envelope
GO:0042405--C:nuclear inclusion body
GO:0031965--C:nuclear membrane
GO:0034399--C:nuclear periphery
GO:0005643--C:nuclear pore
GO:0044615--C:nuclear pore nuclear basket
GO:0005634--C:nucleus
GO:0003682--F:chromatin binding
GO:0070840--F:dynein complex binding
GO:0031072--F:heat shock protein binding
GO:0051019--F:mitogen-activated protein kinase binding
GO:0003729--F:mRNA binding
GO:0005487--F:nucleocytoplasmic transporter activity
GO:0044822--F:poly(A) RNA binding
GO:0042803--F:protein homodimerization activity
GO:0015631--F:tubulin binding
GO:0051301--P:cell division
GO:0034605--P:cellular response to heat
GO:0035457--P:cellular response to interferon-alpha
GO:0000189--P:MAPK import into nucleus
GO:0007067--P:mitotic nuclear division
GO:0007094--P:mitotic spindle assembly checkpoint
GO:0031990--P:mRNA export from nucleus in response to heat stress
GO:0046832--P:negative regulation of RNA export from nucleus
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0045947--P:negative regulation of translational initiation
GO:0006999--P:nuclear pore organization
GO:0006913--P:nucleocytoplasmic transport
GO:0031453--P:positive regulation of heterochromatin assembly
GO:0090316--P:positive regulation of intracellular protein transport
GO:0090267--P:positive regulation of mitotic cell cycle spindle assembly checkpoint
GO:0046827--P:positive regulation of protein export from nucleus
GO:0042307--P:positive regulation of protein import into nucleus
GO:0010965--P:regulation of mitotic sister chromatid separation
GO:1901673--P:regulation of mitotic spindle assembly
GO:0070849--P:response to epidermal growth factor
GO:0006405--P:RNA export from nucleus
GO:0006404--P:RNA import into nucleus