dbPAF Protein Information

Tag Content
dbPAF ID dbPAF-0044970
Uniprot Accession A0A0B7P3V8; YP41B_YEAST;
Genbank Protein ID NP_001291944.1;
Genbank Nucleotide ID NM_001305015.2;
Protein Name Transposon Ty4-P Gag-Pol polyprotein
Protein Synonyms/Alias TY4A-TY4B;Transposon Ty4 TYA-TYB polyprotein;
Gene Name TY4B-P
Gene Synonyms/Alias YPLCTy4-1 POL;YPL060C-A;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)		 Capsid protein (CA) is the structural component of the virus-like particle (VLP), forming the shell that encapsulates the retrotransposons dimeric RNA genome.
Phosphorylation Sites
 dbPAF PTMs: 1
PositionPeptidesSourceReferences ( PMIDs )
298LHESLRNSVKQRLYNcurated22817900
Sequence
(Fasta)		MATPVRDETR NVIDDNISAR IQSKVKTNDT VRQTPSSLRK VSIKDEQVKQ YQRNLNRFKT 60
ILNGLKAEEE KLSETDDIQM LAEKLLKLGE TIDKVENRIV DLVEKIQLLE TNENNNILHE 120
HIDATGTYYL FDTLTSTNKR FYPKDCVFDY RTNNVENIPI LLNNFKKFIK KYQFDDVFEN 180
DIIEIDPREN EILCKIIKEG LGESLDIMNT NTTDIFRIID GLKNKYRSLH GRDVRIRAWE 240
KVLVDTTCRN SALLMNKLQK LVLMEKWIFS KCCQDCPNLK DYLQEAIMGT LHESLRNSVK 300
QRLYNIPHNV GINHEEFLIN TVIETVIDLS PIADDQIENS CMYCKSVFHC SINCKKKPNR 360
ELRPDSTNFS KTYYLQGAQR QQQLKSSAKE QKSWNKTQKK SNKVYNSKKL VIIDTGSGVN 420
ITNDKTLLHN YEDSNRSTRF FGIGKNSSVS VKGYGYIKIK NGHNNTDNKC LLTYYVPEEE 480
STIISCYDLA KKTKMVLSRK YTRLGNKIIK IKTKIVNGVI HVKMNELIER PSDDSKINAI 540
KPTSSPGFKL NKRSITLEDA HKRMGHTGIQ QIENSIKHNH YEESLDLIKE PNEFWCQTCK 600
ISKATKRNHY TGSMNNHSTD HEPGSSWCMD IFGPVSSSNA DTKRYMLIMV DNNTRYCMTS 660
THFNKNAETI LAQIRKNIQY VETQFDRKVR EINSDRGTEF TNDQIEEYFI SKGIHHILTS 720
TQDHAANGRA ERYIRTIVTD ATTLLRQSNL RVKFWEYAVT SATNIRNCLE HKSTGKLPLK 780
AISRQPVTVR LMSFLPFGEK GIIWNHNHKK LKPSGLPSII LCKDPNSYGY KFFIPSKNKI 840
VTSDNYTIPN YTMDGRVRNT QNIYKSHQFS SHNDNEEDQI ETVTNLCEAL ENYEDDNKPI 900
TRLEDLFTEE ELSQIDSNAK YPSPSNNLEG DLDYVFSDVE ESGDYDVESE LSTTNTSIST 960
DKNKILSNKD FNSELASTEI SISEIDKKGL INTSHIDEDK YDEKVHRIPS IIQEKLVGSK 1020
NTIKINDENR ISDRIRSKNI GSILNTGLSR CVDITDESIT NKDESMHNAK PELIQEQFNK 1080
TNHETSFPKE GSIGTKCKIP KYRQ 1105
Keyword

KW-0064--Aspartyl protease
KW-0067--ATP-binding
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0229--DNA integration
KW-0233--DNA recombination
KW-0238--DNA-binding
KW-0239--DNA-directed DNA polymerase
KW-0255--Endonuclease
KW-0378--Hydrolase
KW-0460--Magnesium
KW-0479--Metal-binding
KW-0540--Nuclease
KW-0547--Nucleotide-binding
KW-0548--Nucleotidyltransferase
KW-0539--Nucleus
KW-0645--Protease
KW-1185--Reference proteome
KW-0694--RNA-binding
KW-0695--RNA-directed DNA polymerase
KW-0808--Transferase
KW-0814--Transposable element
KW-0815--Transposition
KW-0917--Virion maturation
KW-1188--Virus exit from host cell
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR001584--Integrase_cat-core
IPR012337--RNaseH-like_dom
PROSITE

PS50994--INTEGRASE
Pfam

PF00665--rve
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004190--F:aspartic-type endopeptidase activity
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0003887--F:DNA-directed DNA polymerase activity
GO:0046872--F:metal ion binding
GO:0003723--F:RNA binding
GO:0003964--F:RNA-directed DNA polymerase activity
GO:0004523--F:RNA-DNA hybrid ribonuclease activity
GO:0015074--P:DNA integration
GO:0006310--P:DNA recombination
GO:0032196--P:transposition
GO:0019076--P:viral release from host cell