dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0016618
Uniprot Accession Q12343; MED4_YEAST; D6W2N0;
Genbank Protein ID NP_014817.3;
Genbank Nucleotide ID NM_001183593.3;
Protein Name Mediator of RNA polymerase II transcription subunit 4
Protein Synonyms/Alias Mediator complex subunit 4;
Gene Name MED4
Gene Synonyms/Alias YOR174W;O3630;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. The Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins.
Phosphorylation Sites
dbPAF PTMs: 9
PositionPeptidesSourceReferences ( PMIDs )
19SMGHIRSSSVSLVAEcurated22817900
20MGHIRSSSVSLVAEAPhosphoPep 2.0;curated19060867; 22369663; 22817900; 19547744
22HIRSSSVSLVAEATScurated22817900; 19547744
222EVPTVPPSQSEEQKGdbPTM 3.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988; 26040289; 22817900
237QMAKKEGTPKTDSFIdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;curated15126497; 17287358; 17330950; 17563356; 18407956; 16381945;
240KKEGTPKTDSFIFDGPhosphoGRID 2.0;curated19823750; 19795423; 24961812
242EGTPKTDSFIFDGTAdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated17287358; 17563356; 18407956; 16381945; 23193290; 20702584;
248DSFIFDGTAKEVGDEPhosphoPep 2.0;curated19060867; 19823750
259VGDEADNTKDKEKEEcurated25315811
Sequence
(Fasta)
MSVQDTKAVE FSMGHIRSSS VSLVAEATSN TNSEDKLSKV QLYEDLCRYE DTLSKLVESV 60
DRFKPNLDIA KDLIRTDEAL FENVKLLAEY DNIYRNLQKI DKDSEELDSK TRKILEILNE 120
CHDELKALPM LEQVEFEKNT ILQQRSKINS TELLDYATKL SKFTKIPPTF DKGAVGPNNF 180
IWPAEDALRR GMLAMASLHS KELTRIPGEE VEETEVPTVP PSQSEEQKGQ MAKKEGTPKT 240
DSFIFDGTAK EVGDEADNTK DKEKEENNDD ALDLDLDLFD PDDF 285
Keyword

KW-0007--Acetylation
KW-0010--Activator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR019258--Mediator_Med4

PROSITE
Pfam

PF10018--Med4

Gene Ontology

GO:0070847--C:core mediator complex
GO:0016592--C:mediator complex
GO:0001104--F:RNA polymerase II transcription cofactor activity
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006366--P:transcription from RNA polymerase II promoter