dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0016606
Uniprot Accession Q12321; MED1_YEAST; D6W474;
Genbank Protein ID NP_015395.1;
Genbank Nucleotide ID NM_001184167.1;
Protein Name Mediator of RNA polymerase II transcription subunit 1
Protein Synonyms/Alias Mediator complex subunit 1;
Gene Name MED1
Gene Synonyms/Alias YPR070W;YP9499.25;YPR063W;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. The Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins.
Phosphorylation Sites
dbPAF PTMs: 9
PositionPeptidesSourceReferences ( PMIDs )
10EGDSYVETLDSMIELcurated22817900
13SYVETLDSMIELFKDcurated22817900
148NNGSSDKSLDSSNASPhosphoGRID 2.0;curated21126336; 25315811
151SSDKSLDSSNASFNNcurated25315811
155SLDSSNASFNNQGKLdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;UniProt;curated18407956; 16381945; 23193290; 19366988; 19779198; 22817900
404PRSNRHGSVVEASRRdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;curated17563356; 18407956; 16381945; 23193290; 19060867; 19366988;
419RRSSTNKSKRPSITEcurated24961812
423TNKSKRPSITEAMMLdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated17330950; 16381945; 23193290; 20702584; 19823750; 19779198;
425KSKRPSITEAMMLKEcurated25315811
Sequence
(Fasta)
MVEGDSYVET LDSMIELFKD YKPGSITLEN ITRLCQTLGL ESFTEELSNE LSRLSTASKI 60
IVIDVDYNKK QDRIQDVKLV LASNFDNFDY FNQRDGEHEK SNILLNSLTK YPDLKAFHNN 120
LKFLYLLDAY SHIESDSTSH NNGSSDKSLD SSNASFNNQG KLDLFKYFTE LSHYIRQCFQ 180
DNCCDFKVRT NLNDKFGIYI LTQGINGKEV PLAKIYLEEN KSDSQYRFYE YIYSQETKSW 240
INESAENFSN GISLVMEIVA NAKESNYTDL IWFPEDFISP ELIIDKVTCS SNSSSSPPII 300
DLFSNNNYNS RIQLMNDFTT KLINIKKFDI SNDNLDLISE ILKWVQWSRI VLQNVFKLVS 360
TPSSNSNSSE LEPDYQAPFS TSTKDKNSST SNTEPIPRSN RHGSVVEASR RRRSSTNKSK 420
RPSITEAMML KEEGLQQFNL HEILSEPAIE EENGDSIKEH STTMDGANDL GFTASVSNQE 480
NAGTDIVMED HGVLQGTSQN YGTATADDAD IEMKDVSSKP SKPESSVLQL IVSEDHIILD 540
TISECNLYDD VKCWSKFIEK FQDIVS 567
Keyword

KW-0010--Activator
KW-0181--Complete proteome
KW-0903--Direct protein sequencing
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR019680--Mediator_Med1

PROSITE
Pfam

PF10744--Med1

Gene Ontology

GO:0070847--C:core mediator complex
GO:0016592--C:mediator complex
GO:0001104--F:RNA polymerase II transcription cofactor activity
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0006351--P:transcription, DNA-templated