dbPAF Protein Information
| Tag | Content | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| dbPAF ID | dbPAF-0016579 | ||||||||
| Uniprot Accession | Q12260; YB21A_YEAST; D6VPQ5; | ||||||||
| Genbank Protein ID | NP_009451.1; | ||||||||
| Genbank Nucleotide ID | NM_001180049.1; | ||||||||
| Protein Name | Transposon Ty2-B Gag polyprotein | ||||||||
| Protein Synonyms/Alias | |||||||||
| Gene Name | TY2A-B | ||||||||
| Gene Synonyms/Alias | YBLWTy2-1 GAG;YBL100W-A;YBL0821;YBL101W-A; | ||||||||
| Organism | Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) | ||||||||
| NCBI Taxa ID | 559292 | ||||||||
| Functional Description (View all) |
Capsid protein (CA) is the structural component of the virus-like particle (VLP), forming the shell that encapsulates the retrotransposons dimeric RNA genome. The particles are assembled from trimer-clustered units and there are holes in the capsid shells that allow for the diffusion of macromolecules. CA has also nucleocapsid-like chaperone activity, promoting primer tRNA(i)-Met annealing to the multipartite primer-binding site (PBS), dimerization of Ty2 RNA and initiation of reverse transcription (By similarity). | ||||||||
| Phosphorylation Sites |
dbPAF PTMs: 1
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| Sequence (Fasta) | MESQQLHQNP HSLHGSAYAS VTSKEVSSNQ DPLAVSASNL PEFDRDSTKV NSQQETTPGT 60 SAVPENHHHV SPQPASVPPP QNGQYQQHGM MTPNKAMASN WAHYQQPSMM TCSHYQTSPA 120 YYQPDPHYPL PQYIPPLSTS SPDPIDSQDQ HSEVPQAKTK VRNNVLPPHT LTSEENFYTW 180 VKFYIRFLKN SNLGDIIPND QGEIKRQMTY EEHAYIYNTF QAFAPFHLLP TWVKQILEIN 240 YADILTVLCK SVSKMQTNNQ ELKDWIALAN LEYDGSTSAD TFEITVSTII QRLKENNINV 300 SDRLACQLIL KGLSGDFKYL RNQYRTKTNM KLSQLFAEIQ LIYDENKIMN LNKPSQYKQH 360 SEYKNVSRTS PNTTNTKVTT RNYHRTNSSK PRAAKAHNIA TSSKFSRVNN DHINESTVSS 420 QYLSDDNELS LRPATERI 439 |
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| Keyword | KW-0181--Complete proteome |
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| Interpro | IPR015820--Retrotransposon_Ty1A_N |
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| PROSITE | |||||||||
| Pfam | PF01021--TYA |
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| Gene Ontology | GO:0005737--C:cytoplasm |