dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0016499
Uniprot Accession Q12124; MED2_YEAST; D6VRY3;
Genbank Protein ID NP_010279.3;
Genbank Nucleotide ID NM_001180064.3;
Protein Name Mediator of RNA polymerase II transcription subunit 2
Protein Synonyms/Alias Mediator complex subunit 2;
Gene Name MED2
Gene Synonyms/Alias YDL005C;D2930;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. The Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins.
Phosphorylation Sites
dbPAF PTMs: 9
PositionPeptidesSourceReferences ( PMIDs )
6--MVVQNSPVSSVHTdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated18407956; 16381945; 23193290; 19060867; 19366988; 26040406;
9VVQNSPVSSVHTANFcurated22817900
10VQNSPVSSVHTANFScurated22369663; 19547744
33MTYKNKLTVCFDDILcurated22817900
190ELGSLQSSSQTQLENdbPTM 3.0;SysPTM 2.018407956; 16381945; 23193290; 19366988
191LGSLQSSSQTQLENAdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988
193SLQSSSQTQLENANAdbPTM 3.0;SysPTM 2.018407956; 16381945; 23193290; 19366988
208ANNGAAFSPLTTTRIdbPTM 3.0;PhosphoGRID 2.0;curated14988503; 16109375; 16381945; 23193290; 22369663
266KGFDDNDSGNNYNDIcurated22369663
Sequence
(Fasta)
MVVQNSPVSS VHTANFSERG SNTRTMTYKN KLTVCFDDIL KVGAEMMMQQ QLKNVQLDSY 60
LVNGFSQSQQ KLLKEKVKLF HGILDDLETS LSQSSSYLET LTALGKEKEK EREEAEKKRA 120
EQENMRKVRE QEELKKRQEL EEASQQQQLQ QNSKEKNGLG LNFSTTAPAN TTDANGSKEN 180
YQELGSLQSS SQTQLENANA ANNGAAFSPL TTTRIQSQQA QPSDVMFNDL NSMDISMFSG 240
LDSTGFDSTA FNATVDETKG FDDNDSGNNY NDINISSIEN NINNNINSTK NGKDNNNESN 300
KNNNGDEKNK NNNEDNENNN NSSEKNNNNN NNNNNNNDDN GNNNNNNSGN DNNNTTNNDS 360
NNKNNSITTG NDNENIVNND LPTTVVSNPG DNPPPADNGE EYLTLNDFND LNIDWSTTGD 420
NGELDLSGFN I 432
Keyword

KW-0010--Activator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR021017--Mediator_Med2_fun

PROSITE
Pfam

PF11214--Med2

Gene Ontology

GO:0070847--C:core mediator complex
GO:0005829--C:cytosol
GO:0016592--C:mediator complex
GO:0005634--C:nucleus
GO:0001103--F:RNA polymerase II repressing transcription factor binding
GO:0001135--F:transcription factor activity, RNA polymerase II transcription factor recruiting
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0051123--P:RNA polymerase II transcriptional preinitiation complex assembly