dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0006863
Uniprot Accession P21580; TNAP3_HUMAN; B2R767; E1P588; Q2HIX9; Q5VXQ7; Q9NSR6;
Genbank Protein ID NP_001257436.1; NP_001257437.1; NP_006281.1; XP_005267176.1; XP_011534397.1;
Genbank Nucleotide ID NM_001270507.1; NM_001270508.1; NM_006290.3; XM_005267119.1; XM_011536095.1;
Protein Name Tumor necrosis factor alpha-induced protein 3
Protein Synonyms/Alias
Gene Name TNFAIP3
Gene Synonyms/Alias OTUD7C;
Organism Homo sapiens(Human)
NCBI Taxa ID 9606
Functional Description
(View all)
Ubiquitin-editing enzyme that contains both ubiquitin ligase and deubiquitinase activities. Involved in immune and inflammatory responses signaled by cytokines, such as TNF-alpha and IL-1 beta, or pathogens via Toll-like receptors (TLRs) through terminating NF-kappa-B activity. Essential component of a ubiquitin-editing protein complex, comprising also RNF11, ITCH and TAX1BP1, that ensures the transient nature of inflammatory signaling pathways. In cooperation with TAX1BP1 promotes disassembly of E2-E3 ubiquitin protein ligase complexes in IL-1R and TNFR-1 pathways; affected are at least E3 ligases TRAF6, TRAF2 and BIRC2, and E2 ubiquitin-conjugating enzymes UBE2N and UBE2D3. In cooperation with TAX1BP1 promotes ubiquitination of UBE2N and proteasomal degradation of UBE2N and UBE2D3. Upon TNF stimulation, deubiquitinates 'Lys-63'-polyubiquitin chains on RIPK1 and catalyzes the formation of 'Lys-48'-polyubiquitin chains. This leads to RIPK1 proteasomal degradation and consequently termination of the TNF- or LPS-mediated activation of NF-kappa-B. Deubiquitinates TRAF6 probably acting on 'Lys-63'-linked polyubiquitin. Upon T-cell receptor (TCR)-mediated T-cell activation, deubiquitinates 'Lys-63'-polyubiquitin chains on MALT1 thereby mediating disassociation of the CBM (CARD11:BCL10:MALT1) and IKK complexes and preventing sustained IKK activation. Deubiquitinates NEMO/IKBKG; the function is facilitated by TNIP1 and leads to inhibition of NF-kappa-B activation. Upon stimulation by bacterial peptidoglycans, probably deubiquitinates RIPK2. Can also inhibit I-kappa-B-kinase (IKK) through a non-catalytic mechanism which involves polyubiquitin; polyubiquitin promotes association with IKBKG and prevents IKK MAP3K7-mediated phosphorylation. Targets TRAF2 for lysosomal degradation. In vitro able to deubiquitinate 'Lys-11'-, 'Lys-48'- and 'Lys-63' polyubiquitin chains. Inhibitor of programmed cell death. Has a role in the function of the lymphoid system. Required for LPS-induced production of proinflammatory cytokines and IFN beta in LPS-tolerized macrophages.
Phosphorylation Sites
dbPAF PTMs: 28 (View all)
PositionPeptidesSourceReferences ( PMIDs )
179IKMASTDTPMARSGLPhosphoSitePlus22135298
306KEKLLKEYLMVIEIPdbPTM 3.0;HPRD 9;PhosphoSitePlus19413330; 16381945; 23193290; 18988627; 22135298
321VQGWDHGTTHLINAAdbPTM 3.0;HPRD 9;PhosphoSitePlus19413330; 16381945; 23193290; 18988627; 22135298
322QGWDHGTTHLINAAKdbPTM 3.0;HPRD 9;PhosphoSitePlus19413330; 16381945; 23193290; 18988627; 22135298
376AQNPMEPSVPQLSLMPhosphoSitePlus22135298
381EPSVPQLSLMDVKCEdbPTM 3.0;PhosphoSitePlus;curated17709380; 16381945; 23193290; 22135298; 25850435; 22817900
454AWNPEESTGGPHSAPdbPTM 3.0;PhosphoSitePlus;curated19276368; 16381945; 23193290; 22135298; 22817900; 26074081
459ESTGGPHSAPPTAPSdbPTM 3.0;Phospho.ELM 9.0;HPRD 9;PhosphoSitePlus;UniProt;curated19690332; 16381945; 23193290; 18669648; 19276368; 18988627;
466SAPPTAPSPFLFSETdbPTM 3.0;PhosphoSitePlus;curated19276368; 16381945; 23193290; 22135298; 22817900
480TTAMKCRSPGCPFTLPhosphoSitePlus22135298
537RTFNGICSTCFKRTTPhosphoSitePlus;curated22135298; 24961811
568QRSKSDPSRLVRSPSdbPTM 3.0;Phospho.ELM 9.0;PhosphoSitePlus;curated17081983; 16381945; 23193290; 22135298; 22817900
573DPSRLVRSPSPHSCHdbPTM 3.0;HPRD 9;PHOSIDA;PhosphoSitePlus;curated20068231; 20363803; 16381945; 23193290; 18988627; 21081558;
575SRLVRSPSPHSCHRAdbPTM 3.0;Phospho.ELM 9.0;HPRD 9;PHOSIDA;PhosphoSitePlus;SysPTM 2.0;UniProt;curated17081983; 16381945; 23193290; 20068231; 20363803; 18988627;
578VRSPSPHSCHRAGNDdbPTM 3.0;HPRD 9;PHOSIDA;PhosphoSitePlus;curated20068231; 16381945; 23193290; 18988627; 21081558; 22135298;
592DAPAGCLSQAARTPGPhosphoSitePlus22135298
597CLSQAARTPGDRTGTPhosphoSitePlus22135298
614CRKAGCVYFGTPENKdbPTM 3.0;PhosphoSitePlus20090780; 16381945; 23193290; 22135298
617AGCVYFGTPENKGFCPhosphoSitePlus22135298
625PENKGFCTLCFIEYRPhosphoSitePlus22135298
Sequence
(Fasta)
MAEQVLPQAL YLSNMRKAVK IRERTPEDIF KPTNGIIHHF KTMHRYTLEM FRTCQFCPQF 60
REIIHKALID RNIQATLESQ KKLNWCREVR KLVALKTNGD GNCLMHATSQ YMWGVQDTDL 120
VLRKALFSTL KETDTRNFKF RWQLESLKSQ EFVETGLCYD TRNWNDEWDN LIKMASTDTP 180
MARSGLQYNS LEEIHIFVLC NILRRPIIVI SDKMLRSLES GSNFAPLKVG GIYLPLHWPA 240
QECYRYPIVL GYDSHHFVPL VTLKDSGPEI RAVPLVNRDR GRFEDLKVHF LTDPENEMKE 300
KLLKEYLMVI EIPVQGWDHG TTHLINAAKL DEANLPKEIN LVDDYFELVQ HEYKKWQENS 360
EQGRREGHAQ NPMEPSVPQL SLMDVKCETP NCPFFMSVNT QPLCHECSER RQKNQNKLPK 420
LNSKPGPEGL PGMALGASRG EAYEPLAWNP EESTGGPHSA PPTAPSPFLF SETTAMKCRS 480
PGCPFTLNVQ HNGFCERCHN ARQLHASHAP DHTRHLDPGK CQACLQDVTR TFNGICSTCF 540
KRTTAEASSS LSTSLPPSCH QRSKSDPSRL VRSPSPHSCH RAGNDAPAGC LSQAARTPGD 600
RTGTSKCRKA GCVYFGTPEN KGFCTLCFIE YRENKHFAAA SGKVSPTASR FQNTIPCLGR 660
ECGTLGSTMF EGYCQKCFIE AQNQRFHEAK RTEEQLRSSQ RRDVPRTTQS TSRPKCARAS 720
CKNILACRSE ELCMECQHPN QRMGPGAHRG EPAPEDPPKQ RCRAPACDHF GNAKCNGYCN 780
ECFQFKQMYG 791
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0053--Apoptosis
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0238--DNA-binding
KW-0378--Hydrolase
KW-0395--Inflammatory response
KW-0436--Ligase
KW-0458--Lysosome
KW-0479--Metal-binding
KW-0511--Multifunctional enzyme
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-0621--Polymorphism
KW-0645--Protease
KW-1185--Reference proteome
KW-0677--Repeat
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR003323--OTU_dom
IPR002653--Znf_A20

PROSITE

PS50802--OTU
PS51036--ZF_A20

Pfam

PF02338--OTU
PF01754--zf-A20

Gene Ontology

GO:0005829--C:cytosol
GO:0070062--C:extracellular exosome
GO:0005764--C:lysosome
GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0070530--F:K63-linked polyubiquitin binding
GO:0016874--F:ligase activity
GO:0002020--F:protease binding
GO:0043621--F:protein self-association
GO:0043130--F:ubiquitin binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0004843--F:ubiquitin-specific protease activity
GO:0008270--F:zinc ion binding
GO:0006915--P:apoptotic process
GO:0001922--P:B-1 B cell homeostasis
GO:0007166--P:cell surface receptor signaling pathway
GO:0070301--P:cellular response to hydrogen peroxide
GO:0071222--P:cellular response to lipopolysaccharide
GO:0072666--P:establishment of protein localization to vacuole
GO:0006954--P:inflammatory response
GO:0045087--P:innate immune response
GO:0050869--P:negative regulation of B cell activation
GO:0045779--P:negative regulation of bone resorption
GO:2000349--P:negative regulation of CD40 signaling pathway
GO:0002677--P:negative regulation of chronic inflammatory response
GO:0045736--P:negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:2000352--P:negative regulation of endothelial cell apoptotic process
GO:1902042--P:negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:0043124--P:negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:0050728--P:negative regulation of inflammatory response
GO:0045824--P:negative regulation of innate immune response
GO:0032691--P:negative regulation of interleukin-1 beta production
GO:0032703--P:negative regulation of interleukin-2 production
GO:0032715--P:negative regulation of interleukin-6 production
GO:0032088--P:negative regulation of NF-kappaB transcription factor activity
GO:0070429--P:negative regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway
GO:0070433--P:negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway
GO:0090291--P:negative regulation of osteoclast proliferation
GO:0031397--P:negative regulation of protein ubiquitination
GO:0048662--P:negative regulation of smooth muscle cell proliferation
GO:0034136--P:negative regulation of toll-like receptor 2 signaling pathway
GO:0034140--P:negative regulation of toll-like receptor 3 signaling pathway
GO:0034144--P:negative regulation of toll-like receptor 4 signaling pathway
GO:0034148--P:negative regulation of toll-like receptor 5 signaling pathway
GO:0032720--P:negative regulation of tumor necrosis factor production
GO:0032480--P:negative regulation of type I interferon production
GO:0035872--P:nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway
GO:0070423--P:nucleotide-binding oligomerization domain containing signaling pathway
GO:1903364--P:positive regulation of cellular protein catabolic process
GO:2000347--P:positive regulation of hepatocyte proliferation
GO:0045732--P:positive regulation of protein catabolic process
GO:0016579--P:protein deubiquitination
GO:0071947--P:protein deubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0035871--P:protein K11-linked deubiquitination
GO:0071108--P:protein K48-linked deubiquitination
GO:0070936--P:protein K48-linked ubiquitination
GO:0070536--P:protein K63-linked deubiquitination
GO:0051259--P:protein oligomerization
GO:0050691--P:regulation of defense response to virus by host
GO:0002634--P:regulation of germinal center formation
GO:0050727--P:regulation of inflammatory response
GO:0010803--P:regulation of tumor necrosis factor-mediated signaling pathway
GO:0061043--P:regulation of vascular wound healing
GO:0002237--P:response to molecule of bacterial origin
GO:0032495--P:response to muramyl dipeptide
GO:0072573--P:tolerance induction to lipopolysaccharide
GO:0033209--P:tumor necrosis factor-mediated signaling pathway