dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0006239
Uniprot Accession P16649; TUP1_YEAST; D6VR85; P17995; P18323;
Genbank Protein ID NP_010007.1;
Genbank Nucleotide ID NM_001178790.1;
Protein Name General transcriptional corepressor TUP1
Protein Synonyms/Alias Flocculation suppressor protein;Glucose repression regulatory protein TUP1;Repressor AER2;
Gene Name TUP1
Gene Synonyms/Alias AAR1;AER2;AMM1;CYC9;FLK1;SFL2;UMR7;YCR084C;YCR84C;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Acts as component of the CYC8-TUP1 corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes including heme-regulated and catabolite repressed genes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors, like MATALPHA2, MIG1, RFX1 and SKO1. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex.
Phosphorylation Sites
dbPAF PTMs: 16
PositionPeptidesSourceReferences ( PMIDs )
150AANTTTGSPSAFPVQdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988
216SNTAINGSPTSKETTdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988
218TAINGSPTSKETTTLdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988
246EPENNNTSKINDTGScurated25315811
253SKINDTGSATTATTTdbPTM 3.0;PHOSIDA;SysPTM 2.0;curated18407956; 16381945; 23193290; 21081558; 19366988; 26040289;
275KPKEEDATPASLHQDcurated25704821
436KDVENLNTSSSPSSDPhosphoGRID 2.021126336
437DVENLNTSSSPSSDLdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988; 26447709; 25315811
438VENLNTSSSPSSDLYdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 20702584; 19366988; 22817900;
439ENLNTSSSPSSDLYIdbPTM 3.0;PhosphoGRID 2.0;PHOSIDA;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated15665377; 18407956; 16381945; 23193290; 17330950; 19779198;
441LNTSSSPSSDLYIRSdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19823750; 19795423; 19366988;
442NTSSSPSSDLYIRSVdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988; 22817900; 25315811
445SSPSSDLYIRSVCFScurated22817900
567FLVERLDSENESGTGcurated25315811
616NNKSDSKTPNSGTCEcurated25315811
621SKTPNSGTCEVTYIGcurated25315811
Sequence
(Fasta)
MTASVSNTQN KLNELLDAIR QEFLQVSQEA NTYRLQNQKD YDFKMNQQLA EMQQIRNTVY 60
ELELTHRKMK DAYEEEIKHL KLGLEQRDHQ IASLTVQQQR QQQQQQQVQQ HLQQQQQQLA 120
AASASVPVAQ QPPATTSATA TPAANTTTGS PSAFPVQASR PNLVGSQLPT TTLPVVSSNA 180
QQQLPQQQLQ QQQLQQQQPP PQVSVAPLSN TAINGSPTSK ETTTLPSVKA PESTLKETEP 240
ENNNTSKIND TGSATTATTT TATETEIKPK EEDATPASLH QDHYLVPYNQ RANHSKPIPP 300
FLLDLDSQSV PDALKKQTND YYILYNPALP REIDVELHKS LDHTSVVCCV KFSNDGEYLA 360
TGCNKTTQVY RVSDGSLVAR LSDDSAANNH RNSITENNTT TSTDNNTMTT TTTTTITTTA 420
MTSAAELAKD VENLNTSSSP SSDLYIRSVC FSPDGKFLAT GAEDRLIRIW DIENRKIVMI 480
LQGHEQDIYS LDYFPSGDKL VSGSGDRTVR IWDLRTGQCS LTLSIEDGVT TVAVSPGDGK 540
YIAAGSLDRA VRVWDSETGF LVERLDSENE SGTGHKDSVY SVVFTRDGQS VVSGSLDRSV 600
KLWNLQNANN KSDSKTPNSG TCEVTYIGHK DFVLSVATTQ NDEYILSGSK DRGVLFWDKK 660
SGNPLLMLQG HRNSVISVAV ANGSPLGPEY NVFATGSGDC KARIWKYKKI APN 714
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR013890--Tscrpt_rep_Tup1_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08581--Tup_N
PF00400--WD40

Gene Ontology

GO:0033588--C:Elongator holoenzyme complex
GO:0000123--C:histone acetyltransferase complex
GO:0005634--C:nucleus
GO:0008023--C:transcription elongation factor complex
GO:0017053--C:transcriptional repressor complex
GO:0042393--F:histone binding
GO:0042826--F:histone deacetylase binding
GO:0036033--F:mediator complex binding
GO:0080025--F:phosphatidylinositol-3,5-bisphosphate binding
GO:0001191--F:transcriptional repressor activity, RNA polymerase II transcription factor binding
GO:0043486--P:histone exchange
GO:0035955--P:negative regulation of dipeptide transport by negative regulation of transcription from RNA polymerase II promoter
GO:0001198--P:negative regulation of mating-type specific transcription from RNA polymerase II promoter
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0000433--P:negative regulation of transcription from RNA polymerase II promoter by glucose
GO:0007070--P:negative regulation of transcription from RNA polymerase II promoter during mitosis
GO:0016584--P:nucleosome positioning
GO:2000531--P:regulation of fatty acid biosynthetic process by regulation of transcription from RNA polymerase II promoter
GO:2000217--P:regulation of invasive growth in response to glucose limitation
GO:2001020--P:regulation of response to DNA damage stimulus
GO:0006351--P:transcription, DNA-templated