dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0006210
Uniprot Accession P16467; PDC5_YEAST; D6VYC9;
Genbank Protein ID NP_013235.1;
Genbank Nucleotide ID NM_001182021.1;
Protein Name Pyruvate decarboxylase isozyme 2
Protein Synonyms/Alias
Gene Name PDC5
Gene Synonyms/Alias YLR134W;L3133;L9606.7;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Second most abundant of three pyruvate decarboxylases (PDC1, PDC5, PDC6) implicated in the nonoxidative conversion of pyruvate to acetaldehyde and carbon dioxide during alcoholic fermentation. Most of the produced acetaldehyde is subsequently reduced to ethanol, but some is required for cytosolic acetyl-CoA production for biosynthetic pathways. The enzyme is also one of five 2-oxo acid decarboxylases (PDC1, PDC5, PDC6, ARO10, and THI3) able to decarboxylate more complex 2-oxo acids (alpha-keto-acids) than pyruvate, which seem mainly involved in amino acid catabolism. Here the enzyme catalyzes the decarboxylation of amino acids, which, in a first step, have been transaminated to the corresponding 2-oxo acids. In a third step, the resulting aldehydes are reduced to alcohols, collectively referred to as fusel oils or alcohols. Its preferred substrates are the transaminated amino acids valine, isoleucine, phenylalanine, and tryptophan, whereas leucine is no substrate. In a side-reaction the carbanionic intermediate (or active aldehyde) generated by decarboxylation or by activation of an aldehyde can react with an aldehyde via condensation (or carboligation) yielding a 2-hydroxy ketone, collectively called acyloins.
Phosphorylation Sites
dbPAF PTMs: 2
PositionPeptidesSourceReferences ( PMIDs )
223ILADACASRHDVKAEPhosphoGRID 2.0;PhosphoPep 2.0;curated21177495; 19060867; 22817900; 24961812; 25315811
311KNIVEFHSDHIKIRNdbPTM 3.0;SysPTM 2.012872131; 16381945; 23193290; 19366988
Sequence
(Fasta)
MSEITLGKYL FERLSQVNCN TVFGLPGDFN LSLLDKLYEV KGMRWAGNAN ELNAAYAADG 60
YARIKGMSCI ITTFGVGELS ALNGIAGSYA EHVGVLHVVG VPSISSQAKQ LLLHHTLGNG 120
DFTVFHRMSA NISETTAMIT DIANAPAEID RCIRTTYTTQ RPVYLGLPAN LVDLNVPAKL 180
LETPIDLSLK PNDAEAEAEV VRTVVELIKD AKNPVILADA CASRHDVKAE TKKLMDLTQF 240
PVYVTPMGKG AIDEQHPRYG GVYVGTLSRP EVKKAVESAD LILSIGALLS DFNTGSFSYS 300
YKTKNIVEFH SDHIKIRNAT FPGVQMKFAL QKLLDAIPEV VKDYKPVAVP ARVPITKSTP 360
ANTPMKQEWM WNHLGNFLRE GDIVIAETGT SAFGINQTTF PTDVYAIVQV LWGSIGFTVG 420
ALLGATMAAE ELDPKKRVIL FIGDGSLQLT VQEISTMIRW GLKPYIFVLN NNGYTIEKLI 480
HGPHAEYNEI QGWDHLALLP TFGARNYETH RVATTGEWEK LTQDKDFQDN SKIRMIEVML 540
PVFDAPQNLV KQAQLTAATN AKQ 564
Keyword

KW-0021--Allosteric enzyme
KW-0101--Branched-chain amino acid catabolism
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0210--Decarboxylase
KW-0456--Lyase
KW-0460--Magnesium
KW-0479--Metal-binding
KW-0539--Nucleus
KW-0585--Phenylalanine catabolism
KW-1185--Reference proteome
KW-0786--Thiamine pyrophosphate
KW-0823--Tryptophan catabolism

Interpro

IPR029035--DHS-like_NAD/FAD-binding_dom
IPR029061--THDP-binding
IPR012000--Thiamin_PyroP_enz_cen_dom
IPR012001--Thiamin_PyroP_enz_TPP-bd_dom
IPR000399--TPP-bd_CS
IPR012110--TPP_enzyme
IPR011766--TPP_enzyme-bd_C

PROSITE

PS00187--TPP_ENZYMES

Pfam

PF02775--TPP_enzyme_C
PF00205--TPP_enzyme_M
PF02776--TPP_enzyme_N

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0047433--F:branched-chain-2-oxoacid decarboxylase activity
GO:0000287--F:magnesium ion binding
GO:0004737--F:pyruvate decarboxylase activity
GO:0030976--F:thiamine pyrophosphate binding
GO:0000949--P:aromatic amino acid family catabolic process to alcohol via Ehrlich pathway
GO:0009083--P:branched-chain amino acid catabolic process
GO:0019655--P:glycolytic fermentation to ethanol
GO:0006559--P:L-phenylalanine catabolic process
GO:0006090--P:pyruvate metabolic process
GO:0006569--P:tryptophan catabolic process