dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0005710
Uniprot Accession P13099; TOP3_YEAST; D6VYN4;
Genbank Protein ID NP_013335.1;
Genbank Nucleotide ID NM_001182121.1;
Protein Name DNA topoisomerase 3
Protein Synonyms/Alias DNA topoisomerase III;
Gene Name TOP3
Gene Synonyms/Alias EDR1;YLR234W;L8083.3;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). Essential for proper chromosome segregation in both meiosis and mitosis. Weakly relaxes negative supercoils and displays a distinct preference for binding single-stranded DNA. The TOP3-SGS1 protein complex may function as a eukaryotic reverse gyrase introducing positive supercoils into extrachromosomal ribosomal DNA rings.
Phosphorylation Sites
dbPAF PTMs: 1
PositionPeptidesSourceReferences ( PMIDs )
30GRSTSRDSGYMYVKNcurated22817900
Sequence
(Fasta)
MKVLCVAEKN SIAKAVSQIL GGGRSTSRDS GYMYVKNYDF MFSGFPFARN GANCEVTMTS 60
VAGHLTGIDF SHDSHGWGKC AIQELFDAPL NEIMNNNQKK IASNIKREAR NADYLMIWTD 120
CDREGEYIGW EIWQEAKRGN RLIQNDQVYR AVFSHLERQH ILNAARNPSR LDMKSVHAVG 180
TRIEIDLRAG VTFTRLLTET LRNKLRNQAT MTKDGAKHRG GNKNDSQVVS YGTCQFPTLG 240
FVVDRFERIR NFVPEEFWYI QLVVENKDNG GTTTFQWDRG HLFDRLSVLT FYETCIETAG 300
NVAQVVDLKS KPTTKYRPLP LTTVELQKNC ARYLRLNAKQ SLDAAEKLYQ KGFISYPRTE 360
TDTFPHAMDL KSLVEKQAQL DQLAAGGRTA WASYAASLLQ PENTSNNNKF KFPRSGSHDD 420
KAHPPIHPIV SLGPEANVSP VERRVYEYVA RHFLACCSED AKGQSMTLVL DWAVERFSAS 480
GLVVLERNFL DVYPWARWET TKQLPRLEMN ALVDIAKAEM KAGTTAPPKP MTESELILLM 540
DTNGIGTDAT IAEHIDKIQV RNYVRSEKVG KETYLQPTTL GVSLVHGFEA IGLEDSFAKP 600
FQRREMEQDL KKICEGHASK TDVVKDIVEK YRKYWHKTNA CKNTLLQVYD RVKASM 657
Keyword

KW-0181--Complete proteome
KW-0903--Direct protein sequencing
KW-0238--DNA-binding
KW-0413--Isomerase
KW-1185--Reference proteome
KW-0799--Topoisomerase

Interpro

IPR000380--Topo_IA
IPR003601--Topo_IA_2
IPR023406--Topo_IA_AS
IPR013497--Topo_IA_cen
IPR013824--Topo_IA_cen_sub1
IPR013826--Topo_IA_cen_sub3
IPR023405--Topo_IA_core_domain
IPR003602--Topo_IA_DNA-bd_dom
IPR006171--Toprim_domain

PROSITE

PS00396--TOPOISOMERASE_I_PROK
PS50880--TOPRIM

Pfam

PF01131--Topoisom_bac
PF01751--Toprim

Gene Ontology

GO:0005634--C:nucleus
GO:0031422--C:RecQ helicase-Topo III complex
GO:0003677--F:DNA binding
GO:0003916--F:DNA topoisomerase activity
GO:0003917--F:DNA topoisomerase type I activity
GO:0006265--P:DNA topological change
GO:0007064--P:mitotic sister chromatid cohesion
GO:0007131--P:reciprocal meiotic recombination
GO:0000018--P:regulation of DNA recombination
GO:0007004--P:telomere maintenance via telomerase