dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0005573
Uniprot Accession P11938; RAP1_YEAST; D6W0X4;
Genbank Protein ID NP_014183.1;
Genbank Nucleotide ID NM_001183054.1;
Protein Name DNA-binding protein RAP1
Protein Synonyms/Alias Repressor/activator site-binding protein;SBF-E;TUF;
Gene Name RAP1
Gene Synonyms/Alias GRF1;TUF1;YNL216W;N1310;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Essential regulatory protein in yeast whose DNA-binding sites are found at three types of chromosomal elements: promoters, silencers, and telomeres. RAP1 is also involved in the regulation of telomere structure, where its binding sites are found within the terminal poly[C(1-3)A] sequences. The opposite regulatory functions of RAP1 are not intrinsic to its binding sites but, instead, result from interactions with different factors at promoters and silencers. RAP1 associates with SIR3 and SIR4 proteins to form a DNA-binding complex that initiates the repression at the HM loci and telomeres. May also target the binding of RIF1 and RIF2 to silencers and telomeres. Forms with GCR1 a transcriptional activation complex that is required for expression of glycolytic and ribosomal gene.
Phosphorylation Sites
dbPAF PTMs: 16
PositionPeptidesSourceReferences ( PMIDs )
142RDADAHDSLNDIDQLcurated22817900; 25315811
225DSRLQEESHSNGVDNPhosphoPep 2.019060867
227RLQEESHSNGVDNSNcurated25315811
233HSNGVDNSNSNSDNKcurated25315811
235NGVDNSNSNSDNKDSPhosphoPep 2.019060867
237VDNSNSNSDNKDSIRcurated26040289; 25315811
288QLLRQHVSSTASITSPhosphoGRID 2.019779198
289LLRQHVSSTASITSGPhosphoGRID 2.0;curated19779198; 22369663
364SHNKASFTDEEDEFIcurated22369663
479IDPDTGRSLITDEDTPhosphoGRID 2.021126336
486SLITDEDTPTAIARRdbPTM 3.0;PhosphoGRID 2.0;PHOSIDA;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated17330950; 18407956; 16381945; 23193290; 19779198; 21081558;
488ITDEDTPTAIARRNMdbPTM 3.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988; 26040406; 22369663
496AIARRNMTMDPNHVPcurated22817900; 19547744
658KNDLSNISNSLPFEYdbPTM 3.0;PhosphoGRID 2.0;curated17563356; 16381945; 23193290; 22369663; 22817900
660DLSNISNSLPFEYPHdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988
731ISGDYEPSQAEKLVQdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;UniProt;curated18407956; 16381945; 23193290; 19366988; 22369663; 24961812
Sequence
(Fasta)
MSSPDDFETA PAEYVDALDP SMVVVDSGSA AVTAPSDSAA EVKANQNEEN TGATAAETSE 60
KVDQTEVEKK DDDDTTEVGV TTTTPSIADT AATANIASTS GASVTEPTTD DTAADEKKEQ 120
VSGPPLSNMK FYLNRDADAH DSLNDIDQLA RLIRANGGEV LDSKPRESKE NVFIVSPYNH 180
TNLPTVTPTY IKACCQSNSL LNMENYLVPY DNFREVVDSR LQEESHSNGV DNSNSNSDNK 240
DSIRPKTEII STNTNGATED STSEKVMVDA EQQARLQEQA QLLRQHVSST ASITSGGHND 300
LVQIEQPQKD TSNNNNSNVN DEDNDLLTQD NNPQTADEGN ASFQAQRSMI SRGALPSHNK 360
ASFTDEEDEF ILDVVRKNPT RRTTHTLYDE ISHYVPNHTG NSIRHRFRVY LSKRLEYVYE 420
VDKFGKLVRD DDGNLIKTKV LPPSIKRKFS ADEDYTLAIA VKKQFYRDLF QIDPDTGRSL 480
ITDEDTPTAI ARRNMTMDPN HVPGSEPNFA AYRTQSRRGP IAREFFKHFA EEHAAHTENA 540
WRDRFRKFLL AYGIDDYISY YEAEKAQNRE PEPMKNLTNR PKRPGVPTPG NYNSAAKRAR 600
NYSSQRNVQP TANAASANAA AAAAAAASNS YAIPENELLD EDTMNFISSL KNDLSNISNS 660
LPFEYPHEIA EAIRSDFSNE DIYDNIDPDT ISFPPKIATT DLFLPLFFHF GSTRQFMDKL 720
HEVISGDYEP SQAEKLVQDL CDETGIRKNF STSILTCLSG DLMVFPRYFL NMFKDNVNPP 780
PNVPGIWTHD DDESLKSNDQ EQIRKLVKKH GTGRMEMRKR FFEKDLL 828
Keyword

KW-0002--3D-structure
KW-0010--Activator
KW-0158--Chromosome
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0678--Repressor
KW-0779--Telomere
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR001357--BRCT_dom
IPR009057--Homeodomain-like
IPR017930--Myb_dom
IPR021661--Rap1_C
IPR015280--Rap1_DNA-bd
IPR001005--SANT/Myb

PROSITE

PS50172--BRCT
PS51294--HTH_MYB

Pfam

PF16589--BRCT_2
PF00249--Myb_DNA-binding
PF09197--Rap1-DNA-bind
PF11626--Rap1_C

Gene Ontology

GO:0005829--C:cytosol
GO:0000228--C:nuclear chromosome
GO:0000784--C:nuclear chromosome, telomeric region
GO:0005634--C:nucleus
GO:0070187--C:telosome
GO:0000987--F:core promoter proximal region sequence-specific DNA binding
GO:0008301--F:DNA binding, bending
GO:0051880--F:G-quadruplex DNA binding
GO:0031492--F:nucleosomal DNA binding
GO:0001132--F:RNA polymerase II transcription factor activity, TBP-class protein binding RNA
GO:0042162--F:telomeric DNA binding
GO:0001094--F:TFIID-class transcription factor binding
GO:0000982--F:transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0001076--F:transcription factor activity, RNA polymerase II transcription factor binding
GO:0030466--P:chromatin silencing at silent mating-type cassette
GO:0006348--P:chromatin silencing at telomere
GO:0035390--P:establishment of chromatin silencing at telomere
GO:0071169--P:establishment of protein localization to chromatin
GO:0070200--P:establishment of protein localization to telomere
GO:0071919--P:G-quadruplex DNA formation
GO:0031936--P:negative regulation of chromatin silencing
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0031848--P:protection from non-homologous end joining at telomere
GO:0072363--P:regulation of glycolytic process by positive regulation of transcription from RNA polymerase II promoter
GO:0000723--P:telomere maintenance
GO:0010833--P:telomere maintenance via telomere lengthening
GO:0006351--P:transcription, DNA-templated