dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0005427
Uniprot Accession P10964; RPA1_YEAST; D6W336; Q99330;
Genbank Protein ID NP_014986.3;
Genbank Nucleotide ID NM_001183761.3;
Protein Name DNA-directed RNA polymerase I subunit RPA190
Protein Synonyms/Alias DNA-directed RNA polymerase I 190 kDa polypeptide;A190;DNA-directed RNA polymerase I largest subunit;
Gene Name RPA190
Gene Synonyms/Alias RPA1;RRN1;YOR341W;O6276;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
DNA-dependent RNA polymerases catalyze the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase I (Pol I) which synthesizes ribosomal RNA precursors. Besides, RNA polymerase I has intrinsic RNA cleavage activity. RPA190 and RPA135 both contribute to the polymerase catalytic activity and together form the Pol I active center. In addition, subunit RPA12 contributes a catalytic zinc ribbon that is required for RNA cleavage by Pol I. A single stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol I. A bridging helix emanates from RPA190 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol I by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition.
Phosphorylation Sites
dbPAF PTMs: 21 (View all)
PositionPeptidesSourceReferences ( PMIDs )
207GRTTERGSFTATVNDcurated24961812
287QAKKLDGSNEASANDPhosphoPep 2.0;curated19060867; 24961812
291LDGSNEASANDEESFcurated24961812
297ASANDEESFDVGRNPPhosphoPep 2.0;curated19060867; 24961812
354RKLVKADSFFMDVLVPhosphoGRID 2.018084032
391QLLSKVLTTSLLIRDPhosphoGRID 2.021126336
392LLSKVLTTSLLIRDLPhosphoGRID 2.021126336
685VWLTSKDSFFTREQYPhosphoGRID 2.018084032
889ILRDNNKSGILDAVTPhosphoGRID 2.0;UniProt;curated19779198; 22817900; 25315811; 19547744
931SMQAMALSGAKGSNVPhosphoGRID 2.0;curated19823750; 19795423; 22817900
936ALSGAKGSNVNVSQIPhosphoGRID 2.018084032
941KGSNVNVSQIMCLLGPhosphoGRID 2.018084032
1264SISKVLLSEVIDKVIcurated22817900; 20377248
1358LQTDVANSSSNSKRLcurated22369663; 24961812; 25315811
1359QTDVANSSSNSKRLEcurated22369663
1362VANSSSNSKRLEEDNcurated24961812
1413GIDSDKESDSDSEDEdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated11875433; 16381945; 23193290; 19366988; 16445868
1415DSDKESDSDSEDEDVdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated11875433; 16381945; 23193290; 19366988; 16445868
1417DKESDSDSEDEDVDMdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated11875433; 16381945; 23193290; 19366988; 16445868
1431MNEQINKSIVEANNNdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988; 22369663; 25315811
Sequence
(Fasta)
MDISKPVGSE ITSVDFGILT AKEIRNLSAK QITNPTVLDN LGHPVSGGLY DLALGAFLRN 60
LCSTCGLDEK FCPGHQGHIE LPVPCYNPLF FNQLYIYLRA SCLFCHHFRL KSVEVHRYAC 120
KLRLLQYGLI DESYKLDEIT LGSLNSSMYT DDEAIEDNED EMDGEGSKQS KDISSTLLNE 180
LKSKRSEYVD MAIAKALSDG RTTERGSFTA TVNDERKKLV HEFHKKLLSR GKCDNCGMFS 240
PKFRKDGFTK IFETALNEKQ ITNNRVKGFI RQDMIKKQKQ AKKLDGSNEA SANDEESFDV 300
GRNPTTRPKT GSTYILSTEV KNILDTVFRK EQCVLQYVFH SRPNLSRKLV KADSFFMDVL 360
VVPPTRFRLP SKLGEEVHEN SQNQLLSKVL TTSLLIRDLN DDLSKLQKDK VSLEDRRVIF 420
SRLMNAFVTI QNDVNAFIDS TKAQGRTSGK VPIPGVKQAL EKKEGLFRKH MMGKRVNYAA 480
RSVISPDPNI ETNEIGVPPV FAVKLTYPEP VTAYNIAELR QAVINGPDKW PGATQIQNED 540
GSLVSLIGMS VEQRKALANQ LLTPSSNVST HTLNKKVYRH IKNRDVVLMN RQPTLHKASM 600
MGHKVRVLPN EKTLRLHYAN TGAYNADFDG DEMNMHFPQN ENARAEALNL ANTDSQYLTP 660
TSGSPVRGLI QDHISAGVWL TSKDSFFTRE QYQQYIYGCI RPEDGHTTRS KIVTLPPTIF 720
KPYPLWTGKQ IITTVLLNVT PPDMPGINLI SKNKIKNEYW GKGSLENEVL FKDGALLCGI 780
LDKSQYGASK YGIVHSLHEV YGPEVAAKVL SVLGRLFTNY ITATAFTCGM DDLRLTAEGN 840
KWRTDILKTS VDTGREAAAE VTNLDKDTPA DDPELLKRLQ EILRDNNKSG ILDAVTSSKV 900
NAITSQVVSK CVPDGTMKKF PCNSMQAMAL SGAKGSNVNV SQIMCLLGQQ ALEGRRVPVM 960
VSGKTLPSFK PYETDAMAGG YVKGRFYSGI KPQEYYFHCM AGREGLIDTA VKTSRSGYLQ 1020
RCLTKQLEGV HVSYDNSIRD ADGTLVQFMY GGDAIDITKE SHMTQFEFCL DNYYALLKKY 1080
NPSALIEHLD VESALKYSKK TLKYRKKHSK EPHYKQSVKY DPVLAKYNPA KYLGSVSENF 1140
QDKLESFLDK NSKLFKSSDG VNEKKFRALM QLKYMRSLIN PGEAVGIIAS QSVGEPSTQM 1200
TLNTFHFAGH GAANVTLGIP RLREIVMTAS AAIKTPQMTL PIWNDVSDEQ ADTFCKSISK 1260
VLLSEVIDKV IVTETTGTSN TAGGNAARSY VIHMRFFDNN EYSEEYDVSK EELQNVISNQ 1320
FIHLLEAAIV KEIKKQKRTT GPDIGVAVPR LQTDVANSSS NSKRLEEDND EEQSHKKTKQ 1380
AVSYDEPDED EIETMREAEK SSDEEGIDSD KESDSDSEDE DVDMNEQINK SIVEANNNMN 1440
KVQRDRQSAI ISHHRFITKY NFDDESGKWC EFKLELAADT EKLLMVNIVE EICRKSIIRQ 1500
IPHIDRCVHP EPENGKRVLV TEGVNFQAMW DQEAFIDVDG ITSNDVAAVL KTYGVEAARN 1560
TIVNEINNVF SRYAISVSFR HLDLIADMMT RQGTYLAFNR QGMETSTSSF MKMSYETTCQ 1620
FLTKAVLDNE REQLDSPSAR IVVGKLNNVG TGSFDVLAKV PNAA 1665
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0240--DNA-directed RNA polymerase
KW-0460--Magnesium
KW-0479--Metal-binding
KW-0548--Nucleotidyltransferase
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0690--Ribosome biogenesis
KW-0804--Transcription
KW-0808--Transferase
KW-0862--Zinc

Interpro

IPR015699--DNA-dir_RNA_pol1_lsu
IPR000722--RNA_pol_asu
IPR006592--RNA_pol_N
IPR007080--RNA_pol_Rpb1_1
IPR007066--RNA_pol_Rpb1_3
IPR007083--RNA_pol_Rpb1_4
IPR007081--RNA_pol_Rpb1_5

PROSITE
Pfam

PF04997--RNA_pol_Rpb1_1
PF00623--RNA_pol_Rpb1_2
PF04983--RNA_pol_Rpb1_3
PF05000--RNA_pol_Rpb1_4
PF04998--RNA_pol_Rpb1_5

Gene Ontology

GO:0005736--C:DNA-directed RNA polymerase I complex
GO:0005730--C:nucleolus
GO:0003677--F:DNA binding
GO:0001054--F:RNA polymerase I activity
GO:0008270--F:zinc ion binding
GO:0042254--P:ribosome biogenesis
GO:0006360--P:transcription from RNA polymerase I promoter
GO:0042790--P:transcription of nuclear large rRNA transcript from RNA polymerase I promoter