dbPAF Protein Information
| Tag | Content | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| dbPAF ID | dbPAF-0005041 | ||||||||
| Uniprot Accession | P0C2I4; YH11A_YEAST; D3DLG7; | ||||||||
| Genbank Protein ID | NP_036195.3; | ||||||||
| Genbank Nucleotide ID | NM_001184437.3; | ||||||||
| Protein Name | Transposon Ty1-H Gag polyprotein | ||||||||
| Protein Synonyms/Alias | Gag-p49;Transposon Ty1 protein A;TY1A;TYA;p58; | ||||||||
| Gene Name | TY1A-H | ||||||||
| Gene Synonyms/Alias | YHRCTy1-1 GAG;YHR214C-C;YHR214C-A; | ||||||||
| Organism | Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) | ||||||||
| NCBI Taxa ID | 559292 | ||||||||
| Functional Description (View all) |
Capsid protein (CA) is the structural component of the virus-like particle (VLP), forming the shell that encapsulates the retrotransposons dimeric RNA genome. The particles are assembled from trimer-clustered units and there are holes in the capsid shells that allow for the diffusion of macromolecules. CA has also nucleocapsid-like chaperone activity, promoting primer tRNA(i)-Met annealing to the multipartite primer-binding site (PBS), dimerization of Ty1 RNA and initiation of reverse transcription (By similarity). | ||||||||
| Phosphorylation Sites |
dbPAF PTMs: 1
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| Sequence (Fasta) | MESQQLSNYP HISHGSACAS VTSKEVHTNQ DPLDVSASKI QEYDKASTKA NSQQTTTPAS 60 SAVPENLHHA SPQPASVPPP QNGPYPQQCM MTQNQANPSG WSFYGHPSMI PYTPYQMSPM 120 YFPPGPQSQF PQYPSSVGTP LSTPSPESGN TFTDSSSADS DMTSTKKYVR PPPMLTSPND 180 FPNWVKTYIK FLQNSNLGGI IPTVNGKPVP PMLTSPNDFP NWVKTYIKFL QNSNLGGIIP 240 TVNGKPVRQI TDDELTFLYN TFQIFAPSQF LPTWVKDILS VDYTDIMKIL SKSIEKMQSD 300 TQEANDIVTL ANLQYNGSTP ADAFETKVTN IIDRLNNNGI HINNKVACQL IMRGLSGEYK 360 FLRYTRHRHL NMTVAELFLD IHAIYEEQQG SRNSKPNYRR NPSDEKNDSR SYTNTTKPKV 420 IARNPQKTNN SKSKTARAHN VSTSNNSPST DNDSISKSTT EPIQLNNKHD LHLRPETY 479 |
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| Keyword | KW-0181--Complete proteome |
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| Interpro | IPR015820--Retrotransposon_Ty1A_N |
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| PROSITE | |||||||||
| Pfam | PF01021--TYA |
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| Gene Ontology | GO:0005737--C:cytoplasm |