dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0004557
Uniprot Accession P07271; PIF1_YEAST; D6VZB2;
Genbank Protein ID NP_013650.1;
Genbank Nucleotide ID NM_001182420.1;
Protein Name ATP-dependent DNA helicase PIF1
Protein Synonyms/Alias DNA repair and recombination helicase PIF1;Petite integration frequency protein 1;Telomere stability protein 1;
Gene Name PIF1
Gene Synonyms/Alias TST1;YML061C;YM9958.01C;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. Efficiently unwinds G-quadruplex (G4) DNA structures and forked RNA-DNA hybrids. Appears to move along DNA in single nucleotide or base pair steps, powered by hydrolysis of 1 molecule of ATP. Processes at an unwinding rate of about 75 bp/s. Resolves G4 structures, preventing replication pausing and double-strand breaks (DSBs) at G4 motifs. Involved in the maintenance of telomeric DNA. Inhibits telomere elongation, de novo telomere formation and telomere addition to DSBs via catalytic inhibition of telomerase. Reduces the processivity of telomerase by displacing active telomerase from DNA ends. Releases telomerase by unwinding the short telomerase RNA/telomeric DNA hybrid that is the intermediate in the telomerase reaction. Involved in the maintenance of ribosomal (rDNA). Required for efficient fork arrest at the replicaion fork barrier within rDNA. Involved in the maintenance of mitochondrial (mtDNA). Required to maintain mtDNA under conditions that introduce dsDNA breaks in mtDNA, either preventing or repairing dsDNA breaks. May inhibit replication progression to allow time for repair. May have a general role in chromosomal replication by affecting Okazaki fragment maturation. May have a role in conjunction with DNA2 helicase/nuclease in 5'-flap extension during Okazaki fragment processing.
Phosphorylation Sites
dbPAF PTMs: 15
PositionPeptidesSourceReferences ( PMIDs )
41AKLSFSMSSRGFRSNcurated22817900
47MSSRGFRSNNFIQAQdbPTM 3.0;SysPTM 2.018407956; 16381945; 23193290; 19366988
70KEDLDLLSDSDDWEEPhosphoGRID 2.0;UniProt;curated19779198; 22817900
72DLDLLSDSDDWEEPDPhosphoGRID 2.0;UniProt;curated19779198; 22817900
169RPALKKESSFDELQNdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;UniProt;curated17563356; 18407956; 16381945; 23193290; 19779198; 19366988;
170PALKKESSFDELQNNdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19060867; 19366988; 26040289;
184NSISQERSLEMINENcurated25315811
210AVLTQRPSFTELQNDdbPTM 3.0;PhosphoGRID 2.0;curated17563356; 16381945; 23193290; 22817900; 25521595; 25315811
212LTQRPSFTELQNDQDcurated25521595; 25315811
584AAMEREQSDGEESAVdbPTM 3.0;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated18407956; 16381945; 23193290; 19060867; 19366988; 26040289;
766DFYLTLSSAESAYKQcurated26040289
769LTLSSAESAYKQLEAcurated26040289
799KYKAKSKSKSNSPAPcurated24961812
801KAKSKSKSNSPAPIScurated24961812
803KSKSKSNSPAPISATPhosphoPep 2.0;curated19060867; 24961812; 25315811
Sequence
(Fasta)
MPKWIRSTLN HIIPRRPFIC SFNSFLLLKN VSHAKLSFSM SSRGFRSNNF IQAQLKHPSI 60
LSKEDLDLLS DSDDWEEPDC IQLETEKQEK KIITDIHKED PVDKKPMRDK NVMNFINKDS 120
PLSWNDMFKP SIIQPPQLIS ENSFDQSSQK KSRSTGFKNP LRPALKKESS FDELQNNSIS 180
QERSLEMINE NEKKKMQFGE KIAVLTQRPS FTELQNDQDD SNLNPHNGVK VKIPICLSKE 240
QESIIKLAEN GHNIFYTGSA GTGKSILLRE MIKVLKGIYG RENVAVTAST GLAACNIGGI 300
TIHSFAGIGL GKGDADKLYK KVRRSRKHLR RWENIGALVV DEISMLDAEL LDKLDFIARK 360
IRKNHQPFGG IQLIFCGDFF QLPPVSKDPN RPTKFAFESK AWKEGVKMTI MLQKVFRQRG 420
DVKFIDMLNR MRLGNIDDET EREFKKLSRP LPDDEIIPAE LYSTRMEVER ANNSRLSKLP 480
GQVHIFNAID GGALEDEELK ERLLQNFLAP KELHLKVGAQ VMMVKNLDAT LVNGSLGKVI 540
EFMDPETYFC YEALTNDPSM PPEKLETWAE NPSKLKAAME REQSDGEESA VASRKSSVKE 600
GFAKSDIGEP VSPLDSSVFD FMKRVKTDDE VVLENIKRKE QLMQTIHQNS AGKRRLPLVR 660
FKASDMSTRM VLVEPEDWAI EDENEKPLVS RVQLPLMLAW SLSIHKSQGQ TLPKVKVDLR 720
RVFEKGQAYV ALSRAVSREG LQVLNFDRTR IKAHQKVIDF YLTLSSAESA YKQLEADEQV 780
KKRKLDYAPG PKYKAKSKSK SNSPAPISAT TQSNNGIAAM LQRHSRKRFQ LKKESNSNQV 840
HSLVSDEPRG QDTEDHILE
Keyword

KW-0024--Alternative initiation
KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0903--Direct protein sequencing
KW-0227--DNA damage
KW-0233--DNA recombination
KW-0234--DNA repair
KW-0238--DNA-binding
KW-0347--Helicase
KW-0378--Hydrolase
KW-0472--Membrane
KW-0496--Mitochondrion
KW-0999--Mitochondrion inner membrane
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0809--Transit peptide

Interpro

IPR003840--DNA_helicase
IPR010285--DNA_helicase_pif1-like
IPR027417--P-loop_NTPase

PROSITE
Pfam

PF05970--PIF1

Gene Ontology

GO:0005743--C:mitochondrial inner membrane
GO:0031966--C:mitochondrial membrane
GO:0005739--C:mitochondrion
GO:0005730--C:nucleolus
GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0043141--F:ATP-dependent 5'-3' DNA helicase activity
GO:0003678--F:DNA helicase activity
GO:0051880--F:G-quadruplex DNA binding
GO:0003697--F:single-stranded DNA binding
GO:0010521--F:telomerase inhibitor activity
GO:0051276--P:chromosome organization
GO:0032508--P:DNA duplex unwinding
GO:0006310--P:DNA recombination
GO:0000733--P:DNA strand renaturation
GO:0000727--P:double-strand break repair via break-induced replication
GO:0044806--P:G-quadruplex DNA unwinding
GO:0000002--P:mitochondrial genome maintenance
GO:0051974--P:negative regulation of telomerase activity
GO:0032211--P:negative regulation of telomere maintenance via telomerase
GO:0000723--P:telomere maintenance
GO:0000722--P:telomere maintenance via recombination