dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0004496
Uniprot Accession P06844; SPT3_YEAST; D6VT26; Q70DE7; Q70DE9; Q70DF1; Q70DF2;
Genbank Protein ID NP_010680.1;
Genbank Nucleotide ID NM_001180700.1;
Protein Name Protein SPT3
Protein Synonyms/Alias Positive regulator of Ty transcription;
Gene Name SPT3
Gene Synonyms/Alias YDR392W;D9509.12;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. SAGA is involved in RNA polymerase II-dependent transcriptional regulation of approximately 10% of yeast genes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction (SPT3, SPT8 and SPT20) and promoter selectivity, interaction with transcription activators (GCN5, ADA2, ADA3 and TRA1), and chromatin modification through histone acetylation (GCN5) and deubiquitination (UBP8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SPT3 is required for recruitment of TATA-binding protein (TBP) to SAGA-dependent promoters. During SAGA-mediated transcriptional inhibition, SPT3 and SPT8 prevent binding of TBP to the TATA box. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3, at least after activation at the GAL1-10 locus. SPT factors 3, 7 and 8 are required for the initiation of Ty transcription from the delta promoter. SPT3 regulates Ty1 as well as the mating factor genes.
Phosphorylation Sites
dbPAF PTMs: 8
PositionPeptidesSourceReferences ( PMIDs )
97NAKDQDASAGVASGTcurated22817900
102DASAGVASGTGNPGAcurated22817900
104SAGVASGTGNPGAGGcurated22817900
261QREQVLQTQKDKSQQcurated22817900
270KDKSQQSSQDNTNFEdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;UniProt;curated18407956; 16381945; 23193290; 19779198; 19366988; 22817900;
274QQSSQDNTNFEFASSPhosphoGRID 2.0;curated21177495; 22817900
280NTNFEFASSTLHRKKPhosphoGRID 2.0;curated21177495; 22817900
323DMRHRALTNFKGGRLcurated22817900
Sequence
(Fasta)
MMDKHKYRVE IQQMMFVSGE INDPPVETTS LIEDIVRGQV IEILLQSNKT AHLRGSRSIL 60
PEDVIFLIRH DKAKVNRLRT YLSWKDLRKN AKDQDASAGV ASGTGNPGAG GEDDLKKAGG 120
GEKDEKDGGN MMKVKKSQIK LPWELQFMFN EHPLENNDDN DDMDEDEREA NIVTLKRLKM 180
ADDRTRNMTK EEYVHWSDCR QASFTFRKNK RFKDWSGISQ LTEGKPHDDV IDILGFLTFE 240
IVCSLTETAL KIKQREQVLQ TQKDKSQQSS QDNTNFEFAS STLHRKKRLF DGPENVINPL 300
KPRHIEEAWR VLQTIDMRHR ALTNFKGGRL SSKPIIM 338
Keyword

KW-0010--Activator
KW-0181--Complete proteome
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR009072--Histone-fold
IPR003195--TFIID-18

PROSITE
Pfam

PF02269--TFIID-18kDa

Gene Ontology

GO:0005829--C:cytosol
GO:0005634--C:nucleus
GO:0000124--C:SAGA complex
GO:0046695--C:SLIK (SAGA-like) complex
GO:0003677--F:DNA binding
GO:0003712--F:transcription cofactor activity
GO:0016568--P:chromatin modification
GO:0016573--P:histone acetylation
GO:0001403--P:invasive growth in response to glucose limitation
GO:0007124--P:pseudohyphal growth
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006366--P:transcription from RNA polymerase II promoter