dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0004378
Uniprot Accession P05759; RS27A_YEAST; D6VYH3; P04838; P14800; P61864; Q6LA96;
Genbank Protein ID NP_013268.1;
Genbank Nucleotide ID NM_001182054.1;
Protein Name Ubiquitin-40S ribosomal protein S31
Protein Synonyms/Alias
Gene Name RPS31
Gene Synonyms/Alias RPS37;UBI3;YLR167W;L9470.14;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, and DNA-damage responses. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity).
Phosphorylation Sites
dbPAF PTMs: 8
PositionPeptidesSourceReferences ( PMIDs )
55KQLEDGRTLSDYNIQcurated24961812
57LEDGRTLSDYNIQKEdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated12872131; 18407956; 16381945; 23193290; 19779198; 19366988;
85KKRKKKVYTTPKKIKcurated25315811
87RKKKVYTTPKKIKHKdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated11875433; 16381945; 23193290; 19823750; 19795423; 19366988;
104KVKLAVLSYYKVDAEcurated22369663
105VKLAVLSYYKVDAEGPhosphoPep 2.019060867
106KLAVLSYYKVDAEGKPhosphoPep 2.019060867
122TKLRRECSNPTCGAGdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated17287358; 18407956; 16381945; 23193290; 21177495; 19779198;
Sequence
(Fasta)
MQIFVKTLTG KTITLEVESS DTIDNVKSKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGGKKR KKKVYTTPKK IKHKHKKVKL AVLSYYKVDA EGKVTKLRRE 120
CSNPTCGAGV FLANHKDRLY CGKCHSVYKV NA 153
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0903--Direct protein sequencing
KW-1017--Isopeptide bond
KW-0479--Metal-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0689--Ribosomal protein
KW-0832--Ubl conjugation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR002906--Ribosomal_S27a
IPR011332--Ribosomal_zn-bd
IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF01599--Ribosomal_S27
PF00240--ubiquitin

Gene Ontology

GO:0022627--C:cytosolic small ribosomal subunit
GO:0005634--C:nucleus
GO:0046872--F:metal ion binding
GO:0031386--F:protein tag
GO:0003735--F:structural constituent of ribosome
GO:0002181--P:cytoplasmic translation
GO:0002109--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S)
GO:0000028--P:ribosomal small subunit assembly
GO:0042254--P:ribosome biogenesis