dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0004219
Uniprot Accession P04786; TOP1_YEAST; D6W261;
Genbank Protein ID NP_014637.1;
Genbank Nucleotide ID NM_001183260.1;
Protein Name DNA topoisomerase 1
Protein Synonyms/Alias DNA topoisomerase I;Maintenance of killer protein 1;
Gene Name TOP1
Gene Synonyms/Alias MAK1;YOL006C;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity).
Phosphorylation Sites
dbPAF PTMs: 12
PositionPeptidesSourceReferences ( PMIDs )
2------MTIADASKVcurated26040406
7-MTIADASKVNHELScurated26040406
14SKVNHELSSDDDDDVdbPTM 3.0;PhosphoGRID 2.0;PHOSIDA;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated17330950; 17563356; 18407956; 16381945; 23193290; 21177495;
15KVNHELSSDDDDDVPdbPTM 3.0;PhosphoGRID 2.0;PHOSIDA;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated17330950; 17563356; 18407956; 16381945; 23193290; 21177495;
24DDDDVPLSQTLKKRKdbPTM 3.0;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated18407956; 16381945; 23193290; 19060867; 19366988; 26040289;
26DDVPLSQTLKKRKVAPhosphoGRID 2.0;PhosphoPep 2.0;curated19823750; 19795423; 19060867; 22817900
34LKKRKVASMNSASLQPhosphoGRID 2.021126336
47LQDEAEPYDSDEAISdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;curated17330950; 16381945; 23193290; 20702584; 19823750; 19779198;
49DEAEPYDSDEAISKIdbPTM 3.0;PhosphoGRID 2.0;PHOSIDA;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated17563356; 18407956; 16381945; 23193290; 17330950; 20702584;
54YDSDEAISKISKKKTdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19060867; 19366988; 26040406;
66KKTKKIKTEPVQSSSPhosphoGRID 2.021126336
76VQSSSLPSPPAKKSAdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated17330950; 18407956; 16381945; 23193290; 21177495; 19779198;
Sequence
(Fasta)
MTIADASKVN HELSSDDDDD VPLSQTLKKR KVASMNSASL QDEAEPYDSD EAISKISKKK 60
TKKIKTEPVQ SSSLPSPPAK KSATSKPKKI KKEDGDVKVK TTKKEEQENE KKKREEEEEE 120
DKKAKEEEEE YKWWEKENED DTIKWVTLKH NGVIFPPPYQ PLPSHIKLYY DGKPVDLPPQ 180
AEEVAGFFAA LLESDHAKNP VFQKNFFNDF LQVLKESGGP LNGIEIKEFS RCDFTKMFDY 240
FQLQKEQKKQ LTSQEKKQIR LEREKFEEDY KFCELDGRRE QVGNFKVEPP DLFRGRGAHP 300
KTGKLKRRVN PEDIVLNLSK DAPVPPAPEG HKWGEIRHDN TVQWLAMWRE NIFNSFKYVR 360
LAANSSLKGQ SDYKKFEKAR QLKSYIDAIR RDYTRNLKSK VMLERQKAVA IYLIDVFALR 420
AGGEKSEDEA DTVGCCSLRY EHVTLKPPNT VIFDFLGKDS IRFYQEVEVD KQVFKNLTIF 480
KRPPKQPGHQ LFDRLDPSIL NKYLQNYMPG LTAKVFRTYN ASKTMQDQLD LIPNKGSVAE 540
KILKYNAANR TVAILCNHQR TVTKGHAQTV EKANNRIQEL EWQKIRCKRA ILQLDKDLLK 600
KEPKYFEEID DLTKEDEATI HKRIIDREIE KYQRKFVREN DKRKFEKEEL LPESQLKEWL 660
EKVDEKKQEF EKELKTGEVE LKSSWNSVEK IKAQVEKLEQ RIQTSSIQLK DKEENSQVSL 720
GTSKINYIDP RLSVVFCKKY DVPIEKIFTK TLREKFKWAI ESVDENWRF
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0413--Isomerase
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0799--Topoisomerase
KW-0832--Ubl conjugation

Interpro

IPR011010--DNA_brk_join_enz
IPR013034--DNA_topo_domain1
IPR001631--TopoI
IPR018521--TopoI_AS
IPR025834--TopoI_C_dom
IPR014711--TopoI_cat_a-hlx-sub_euk
IPR014727--TopoI_cat_a/b-sub_euk
IPR013500--TopoI_cat_euk
IPR008336--TopoI_DNA-bd_euk
IPR013030--TopoI_DNA-bd_mixed-a/b_euk
IPR013499--TopoI_euk

PROSITE

PS00176--TOPOISOMERASE_I_EUK

Pfam

PF14370--Topo_C_assoc
PF01028--Topoisom_I
PF02919--Topoisom_I_N

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0031298--C:replication fork protection complex
GO:0003677--F:DNA binding
GO:0003917--F:DNA topoisomerase type I activity
GO:0003918--F:DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0006333--P:chromatin assembly or disassembly
GO:0000183--P:chromatin silencing at rDNA
GO:0007059--P:chromosome segregation
GO:0006260--P:DNA replication
GO:0006271--P:DNA strand elongation involved in DNA replication
GO:0006265--P:DNA topological change
GO:0007076--P:mitotic chromosome condensation
GO:0007097--P:nuclear migration
GO:0000019--P:regulation of mitotic recombination
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006368--P:transcription elongation from RNA polymerase II promoter