Tag |
Content |
dbPAF ID |
dbPAF-0004219 |
Uniprot Accession |
P04786; TOP1_YEAST; D6W261; |
Genbank Protein ID |
NP_014637.1; |
Genbank Nucleotide ID |
NM_001183260.1; |
Protein Name |
DNA topoisomerase 1 |
Protein Synonyms/Alias |
DNA topoisomerase I;Maintenance of killer protein 1; |
Gene Name |
TOP1 |
Gene Synonyms/Alias |
MAK1;YOL006C; |
Organism |
Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) |
NCBI Taxa ID |
559292 |
Functional Description (View all) |
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity).Functional Description
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity).
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Phosphorylation Sites
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dbPAF PTMs: 12 |
Sequence (Fasta) | MTIADASKVN HELSSDDDDD VPLSQTLKKR KVASMNSASL QDEAEPYDSD EAISKISKKK 60 TKKIKTEPVQ SSSLPSPPAK KSATSKPKKI KKEDGDVKVK TTKKEEQENE KKKREEEEEE 120 DKKAKEEEEE YKWWEKENED DTIKWVTLKH NGVIFPPPYQ PLPSHIKLYY DGKPVDLPPQ 180 AEEVAGFFAA LLESDHAKNP VFQKNFFNDF LQVLKESGGP LNGIEIKEFS RCDFTKMFDY 240 FQLQKEQKKQ LTSQEKKQIR LEREKFEEDY KFCELDGRRE QVGNFKVEPP DLFRGRGAHP 300 KTGKLKRRVN PEDIVLNLSK DAPVPPAPEG HKWGEIRHDN TVQWLAMWRE NIFNSFKYVR 360 LAANSSLKGQ SDYKKFEKAR QLKSYIDAIR RDYTRNLKSK VMLERQKAVA IYLIDVFALR 420 AGGEKSEDEA DTVGCCSLRY EHVTLKPPNT VIFDFLGKDS IRFYQEVEVD KQVFKNLTIF 480 KRPPKQPGHQ LFDRLDPSIL NKYLQNYMPG LTAKVFRTYN ASKTMQDQLD LIPNKGSVAE 540 KILKYNAANR TVAILCNHQR TVTKGHAQTV EKANNRIQEL EWQKIRCKRA ILQLDKDLLK 600 KEPKYFEEID DLTKEDEATI HKRIIDREIE KYQRKFVREN DKRKFEKEEL LPESQLKEWL 660 EKVDEKKQEF EKELKTGEVE LKSSWNSVEK IKAQVEKLEQ RIQTSSIQLK DKEENSQVSL 720 GTSKINYIDP RLSVVFCKKY DVPIEKIFTK TLREKFKWAI ESVDENWRF
Fasta Sequence
>P04786|TOP1|Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast) MTIADASKVNHELSSDDDDDVPLSQTLKKRKVASMNSASLQDEAEPYDSDEAISKISKKKTKKIKTEPVQSSSLPSPPAKKSATSKPKKIKKEDGDVKVKTTKKEEQENEKKKREEEEEEDKKAKEEEEEYKWWEKENEDDTIKWVTLKHNGVIFPPPYQPLPSHIKLYYDGKPVDLPPQAEEVAGFFAALLESDHAKNPVFQKNFFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPKTGKLKRRVNPEDIVLNLSKDAPVPPAPEGHKWGEIRHDNTVQWLAMWRENIFNSFKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLIDVFALRAGGEKSEDEADTVGCCSLRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFKNLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNKGSVAEKILKYNAANRTVAILCNHQRTVTKGHAQTVEKANNRIQELEWQKIRCKRAILQLDKDLLKKEPKYFEEIDDLTKEDEATIHKRIIDREIEKYQRKFVRENDKRKFEKEELLPESQLKEWLEKVDEKKQEFEKELKTGEVELKSSWNSVEKIKAQVEKLEQRIQTSSIQLKDKEENSQVSLGTSKINYIDPRLSVVFCKKYDVPIEKIFTKTLREKFKWAIESVDENWRF
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Keyword |
KW-0002--3D-structure KW-0181--Complete proteome KW-0238--DNA-binding KW-0413--Isomerase KW-1017--Isopeptide bond KW-0539--Nucleus KW-0597--Phosphoprotein KW-1185--Reference proteome KW-0799--Topoisomerase KW-0832--Ubl conjugation
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Interpro |
IPR011010--DNA_brk_join_enz IPR013034--DNA_topo_domain1 IPR001631--TopoI IPR018521--TopoI_AS IPR025834--TopoI_C_dom IPR014711--TopoI_cat_a-hlx-sub_euk IPR014727--TopoI_cat_a/b-sub_euk IPR013500--TopoI_cat_euk IPR008336--TopoI_DNA-bd_euk IPR013030--TopoI_DNA-bd_mixed-a/b_euk IPR013499--TopoI_euk
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PROSITE |
PS00176--TOPOISOMERASE_I_EUK
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Pfam |
PF14370--Topo_C_assoc PF01028--Topoisom_I PF02919--Topoisom_I_N
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Gene Ontology |
GO:0005730--C:nucleolus GO:0005654--C:nucleoplasm GO:0005634--C:nucleus GO:0031298--C:replication fork protection complex GO:0003677--F:DNA binding GO:0003917--F:DNA topoisomerase type I activity GO:0003918--F:DNA topoisomerase type II (ATP-hydrolyzing) activity GO:0006333--P:chromatin assembly or disassembly GO:0000183--P:chromatin silencing at rDNA GO:0007059--P:chromosome segregation GO:0006260--P:DNA replication GO:0006271--P:DNA strand elongation involved in DNA replication GO:0006265--P:DNA topological change GO:0007076--P:mitotic chromosome condensation GO:0007097--P:nuclear migration GO:0000019--P:regulation of mitotic recombination GO:0006357--P:regulation of transcription from RNA polymerase II promoter GO:0006368--P:transcription elongation from RNA polymerase II promoter
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