dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0004142
Uniprot Accession P04147; PABP_YEAST; D3DM73;
Genbank Protein ID NP_011092.1;
Genbank Nucleotide ID NM_001179055.1;
Protein Name Polyadenylate-binding protein, cytoplasmic and nuclear
Protein Synonyms/Alias
Gene Name PAB1
Gene Synonyms/Alias YER165W;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
Binds the poly(A) tail of mRNA. Appears to be an important mediator of the multiple roles of the poly(A) tail in mRNA biogenesis, stability and translation. In the nucleus, interacts with the nuclear cleavage factor IA (CFIA), which is required for both mRNA cleavage and polyadenylation. Is also required for efficient mRNA export to the cytoplasm. Acts in concert with a poly(A)-specific nuclease (PAN) to affect poly(A) tail shortening, which may occur concomitantly with either nucleocytoplasmic mRNA transport or translational initiation. Regulates PAN activity via interaction with the stimulator PAN3 or the inhibitor PBP1. In the cytoplasm, affects both translation and mRNA decay. Stimulates translation by interaction with translation initiation factor eIF4G, a subunit of the cap-binding complex eIF4F, bringing the 5'- and 3'-ends of the mRNA in proximity. The formation of this circular mRNP structure appears to be critical for the synergistic effects of the cap and the poly(A) tail in facilitating translation initiation, recycling of ribosomes, and mRNA stability. Also regulates translation termination by recruiting eukaryotic release factor 3 (eRF3). Interaction with eRF3 is also required for regulation of normal mRNA decay through translation termination-coupled poly(A) shortening, probably mediated by PAN. Loss of PAB1 from the mRNP after deadenylation triggers mRNA degradation. Inhibits the major cytoplasmic mRNA deadenylase CCR4-NOT complex. Is also associated peripherally with COPI vesicles through its interaction with ARF1, and this is required for correct localization of the asymmetrically distributed ASH1 mRNA.
Phosphorylation Sites
dbPAF PTMs: 12
PositionPeptidesSourceReferences ( PMIDs )
8MADITDKTAEQLENLcurated24961812; 25315811
63DIFSPIGSVSSIRVCdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988
102AIEQLNYTPIKGRLCPhosphoGRID 2.0;curated21126336; 22369663; 24961812; 26040289; 20377248
119MWSQRDPSLRKKGSGcurated22369663
125PSLRKKGSGNIFIKNdbPTM 3.0;PhosphoGRID 2.0;PHOSIDA;SysPTM 2.0;curated18407956; 16381945; 23193290; 19823750; 19779198; 19795423;
209LSRKERDSQLEETKAcurated25315811
249FGPIVSASLEKDADGdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;UniProt;curated18407956; 16381945; 23193290; 19366988; 24961812
332FVKNLDDSVDDEKLEPhosphoGRID 2.0;UniProt;curated19779198; 22369663; 22817900; 24961812; 25315811
393IVAGKPLYVAIAQRKPhosphoPep 2.019060867
405QRKDVRRSQLAQQIQdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated18407956; 16381945; 23193290; 21177495; 21126336; 19684113;
560EQHYKEASAAYESFKcurated24961812; 25315811
565EASAAYESFKKEQEQPhosphoGRID 2.019779198
Sequence
(Fasta)
MADITDKTAE QLENLNIQDD QKQAATGSES QSVENSSASL YVGDLEPSVS EAHLYDIFSP 60
IGSVSSIRVC RDAITKTSLG YAYVNFNDHE AGRKAIEQLN YTPIKGRLCR IMWSQRDPSL 120
RKKGSGNIFI KNLHPDIDNK ALYDTFSVFG DILSSKIATD ENGKSKGFGF VHFEEEGAAK 180
EAIDALNGML LNGQEIYVAP HLSRKERDSQ LEETKAHYTN LYVKNINSET TDEQFQELFA 240
KFGPIVSASL EKDADGKLKG FGFVNYEKHE DAVKAVEALN DSELNGEKLY VGRAQKKNER 300
MHVLKKQYEA YRLEKMAKYQ GVNLFVKNLD DSVDDEKLEE EFAPYGTITS AKVMRTENGK 360
SKGFGFVCFS TPEEATKAIT EKNQQIVAGK PLYVAIAQRK DVRRSQLAQQ IQARNQMRYQ 420
QATAAAAAAA AGMPGQFMPP MFYGVMPPRG VPFNGPNPQQ MNPMGGMPKN GMPPQFRNGP 480
VYGVPPQGGF PRNANDNNQF YQQKQRQALG EQLYKKVSAK TSNEEAAGKI TGMILDLPPQ 540
EVFPLLESDE LFEQHYKEAS AAYESFKKEQ EQQTEQA 578
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0903--Direct protein sequencing
KW-0488--Methylation
KW-0507--mRNA processing
KW-0509--mRNA transport
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0694--RNA-binding
KW-0810--Translation regulation
KW-0813--Transport

Interpro

IPR012677--Nucleotide-bd_a/b_plait
IPR006515--PABP_1234
IPR002004--PABP_HYD
IPR000504--RRM_dom

PROSITE

PS51309--PABC
PS50102--RRM

Pfam

PF00658--PABP
PF00076--RRM_1

Gene Ontology

GO:0005737--C:cytoplasm
GO:0010494--C:cytoplasmic stress granule
GO:0005634--C:nucleus
GO:0005840--C:ribosome
GO:0000166--F:nucleotide binding
GO:0008143--F:poly(A) binding
GO:0008428--F:ribonuclease inhibitor activity
GO:0006397--P:mRNA processing
GO:0051028--P:mRNA transport
GO:0043086--P:negative regulation of catalytic activity
GO:0060211--P:regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0006446--P:regulation of translational initiation