dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0003874
Uniprot Accession P01123; YPT1_YEAST; D6VTJ2;
Genbank Protein ID NP_116615.1;
Genbank Nucleotide ID NM_001179928.1;
Protein Name GTP-binding protein YPT1
Protein Synonyms/Alias Protein YP2;Rab GTPase YPT1;Transport GTPase YPT1;
Gene Name YPT1
Gene Synonyms/Alias YP2;YFL038C;
Organism Saccharomyces cerevisiae (strain ATCC 204508 / S288c)(Baker's yeast)
NCBI Taxa ID 559292
Functional Description
(View all)
The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. YPT1 regulates the trafficking of secretory vesicles from the endoplasmic reticulum (ER) to the Golgi. Vesicular transport depends on shuttling of YPT1 between membrane and cytosol by GDI1, probably by recycling it to its membrane of origin after a vesicle fusion event. Plays a role in the initial events of the autophagic vacuole development which take place at specialized regions of the endoplasmic reticulum. Also involved in the recycling of membrane proteins.
Phosphorylation Sites
dbPAF PTMs: 5
PositionPeptidesSourceReferences ( PMIDs )
3-----MNSEYDYLFKPhosphoGRID 2.021126336
17KLLLIGNSGVGKSCLdbPTM 3.0;PhosphoGRID 2.0;SysPTM 2.0;curated18407956; 16381945; 23193290; 19366988
29SCLLLRFSDDTYTNDPhosphoGRID 2.021126336
172MARQIKESMSQQNLNdbPTM 3.0;PhosphoGRID 2.0;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated18407956; 16381945; 23193290; 21126336; 20702584; 19779198;
174RQIKESMSQQNLNETdbPTM 3.0;PhosphoGRID 2.0;PHOSIDA;PhosphoPep 2.0;SysPTM 2.0;UniProt;curated17563356; 18407956; 16381945; 23193290; 20702584; 19823750;
Sequence
(Fasta)
MNSEYDYLFK LLLIGNSGVG KSCLLLRFSD DTYTNDYIST IGVDFKIKTV ELDGKTVKLQ 60
IWDTAGQERF RTITSSYYRG SHGIIIVYDV TDQESFNGVK MWLQEIDRYA TSTVLKLLVG 120
NKCDLKDKRV VEYDVAKEFA DANKMPFLET SALDSTNVED AFLTMARQIK ESMSQQNLNE 180
TTQKKEDKGN VNLKGQSLTN TGGGCC 207
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0072--Autophagy
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0903--Direct protein sequencing
KW-0256--Endoplasmic reticulum
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0342--GTP-binding
KW-0449--Lipoprotein
KW-0472--Membrane
KW-0547--Nucleotide-binding
KW-0564--Palmitate
KW-0597--Phosphoprotein
KW-0636--Prenylation
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport

Interpro

IPR027417--P-loop_NTPase
IPR005225--Small_GTP-bd_dom
IPR001806--Small_GTPase
IPR003579--Small_GTPase_Rab_type

PROSITE

PS51419--RAB

Pfam

PF00071--Ras

Gene Ontology

GO:0031410--C:cytoplasmic vesicle
GO:0005789--C:endoplasmic reticulum membrane
GO:0000139--C:Golgi membrane
GO:0005795--C:Golgi stack
GO:0000407--C:pre-autophagosomal structure
GO:0034045--C:pre-autophagosomal structure membrane
GO:0005802--C:trans-Golgi network
GO:0005525--F:GTP binding
GO:0003924--F:GTPase activity
GO:0000149--F:SNARE binding
GO:0090114--P:COPII-coated vesicle budding
GO:0032258--P:CVT pathway
GO:0034498--P:early endosome to Golgi transport
GO:0032456--P:endocytic recycling
GO:0006888--P:ER to Golgi vesicle-mediated transport
GO:0048194--P:Golgi vesicle budding
GO:0048211--P:Golgi vesicle docking
GO:0016236--P:macroautophagy
GO:1990261--P:pre-mRNA catabolic process
GO:0006461--P:protein complex assembly
GO:0032482--P:Rab protein signal transduction
GO:1900101--P:regulation of endoplasmic reticulum unfolded protein response
GO:0061709--P:reticulophagy
GO:0006890--P:retrograde vesicle-mediated transport, Golgi to ER
GO:0035494--P:SNARE complex disassembly