dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0003724
Uniprot Accession O96651; TOP3B_DROME; Q5U0X6; Q9W416;
Genbank Protein ID NP_001284938.1; NP_511059.2;
Genbank Nucleotide ID NM_001298009.1; NM_078504.4;
Protein Name DNA topoisomerase 3-beta
Protein Synonyms/Alias DNA topoisomerase III beta;
Gene Name Top3beta
Gene Synonyms/Alias TOP3;CG3458;
Organism Drosophila melanogaster(Fruit fly)
NCBI Taxa ID 7227
Functional Description
(View all)
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand than undergoes passage around the unbroken strand thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). Weakly relaxes negative supercoils and displays a distinct preference for binding single-stranded DNA.
Phosphorylation Sites
dbPAF PTMs: 1
PositionPeptidesSourceReferences ( PMIDs )
32RCTAKRGTGNGCSTHcurated22817900
Sequence
(Fasta)
MKSVLMVAEK PSLAASLAGI LSNGRCTAKR GTGNGCSTHE WTGNFRNEGS VHFRMTSVCG 60
HVMSLDFNKK YNCWDKVDPI QLFGCATEKK ETNPKQNMRK FLAHEARGCD YLVLWLDCDK 120
EGENICFEVM DAVKHVINNV YSDQVTYRAH FSAITEKDIK KAMETLGHPN ENEAKSVDAR 180
QELDLRIGCA FTRFQTKFFQ DRYGDLDSSL ISYGPCQTPT LGFCVKRHDD IQTFKPESFW 240
HLQLLAGQPE VTLEWARGRV FKKDIAIMLL NRVKEHKKAT VESVASKEAY KSKPQALNTV 300
ELMRICSSGL GIGPFQAMQI AERLYTQGYI SYPRTETNQY PTNFDLPAVL HVLKPSADFG 360
EEARSILGDI QTPRKGKDAG DHPPITPMKL GNRSDFDRDT WRVYEFICRH FMGTVSRDLK 420
YRVTTAKLSV GMETFSCTAS VLIDAGFTKV MTWSAFGKDE PQPPFVQGTQ VAINDVRLIE 480
SQTGPPDYLT ESELITLMEE HGIGTDASIP VHINNICQRN YVHIENGRKL MPTTLGIVLV 540
HGYQKIDPEL VLPTMRTEVE RMLTLIAQGS ANFQDVLRHA IKIFKLKFMY FVKNIDSMDA 600
LFEVSFSPLA ESGKAHSRCG KCRRYMKYIQ TKPARLHCSH CDETYALPIG NVKVYREFKC 660
PLDDFDLLAF STGVKGRSYP FCPYCYNHPP FSDMPHLGGC NTCTNANCPH SLNTLGISSC 720
VECPTGVLVL DCTLAPTWKL GCNRCDVIIN CFKGATKITV EEAKCQECGA QQVNVVYKSD 780
KSKFKDGSEE KSGCIFCSAD FSHLVEKHRA VASRPVRSGG GFRGGKAGRG GGGMGGAAFG 840
SGGAVTAGGG PNAGGGVRGS RVAKDKMGQL ASYFV 876
Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0413--Isomerase
KW-1185--Reference proteome
KW-0799--Topoisomerase

Interpro

IPR000380--Topo_IA
IPR003601--Topo_IA_2
IPR023406--Topo_IA_AS
IPR013497--Topo_IA_cen
IPR013824--Topo_IA_cen_sub1
IPR013826--Topo_IA_cen_sub3
IPR023405--Topo_IA_core_domain
IPR003602--Topo_IA_DNA-bd_dom
IPR006171--Toprim_domain

PROSITE

PS00396--TOPOISOMERASE_I_PROK
PS50880--TOPRIM

Pfam

PF01131--Topoisom_bac
PF01751--Toprim

Gene Ontology

GO:0003677--F:DNA binding
GO:0003916--F:DNA topoisomerase activity
GO:0003917--F:DNA topoisomerase type I activity
GO:0004520--F:endodeoxyribonuclease activity
GO:0000737--P:DNA catabolic process, endonucleolytic
GO:0006265--P:DNA topological change
GO:0051965--P:positive regulation of synapse assembly