dbPAF Protein Information

Tag Content
dbPAF ID dbPAF-0001398
Uniprot Accession O42923; CIP1_SCHPO;
Genbank Protein ID NP_596771.1;
Genbank Nucleotide ID NM_001023792.2;
Protein Name RNA-binding post-transcriptional regulator cip1
Protein Synonyms/Alias Csx1-interacting protein 1;
Gene Name cip1
Gene Synonyms/Alias SPBC16A3.18;
Organism Schizosaccharomyces pombe (strain 972 / ATCC 24843)(Fission yeast)
NCBI Taxa ID 284812
Functional Description
(View all)		 Regulates global gene expression after oxidative stress. Interacts and stabilizes mRNAs and may regulate their transition between different cytoplasmic components after oxidative stress.
Phosphorylation Sites
 dbPAF PTMs: 17
PositionPeptidesSourceReferences ( PMIDs )
37EALSRLQSPLNSPKLdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
41RLQSPLNSPKLQPIGdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
49PKLQPIGSPQASRKTdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
53PIGSPQASRKTSGSGcurated22817900
86RAASPAPSDSFPTFGdbPTM 3.0;UniProt18257517; 16381945; 23193290
133SNSANEASAMAFHNVcurated22817900
141AMAFHNVSPPSGAESdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
185TQIKAGSTANSNSTPcurated22817900
191STANSNSTPVEPGEDcurated22817900
395NKKNTSVSQSQPASPcurated22817900
397KNTSVSQSQPASPNLdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
401VSQSQPASPNLRFNMdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
427HSLNGTKSAPITPPPdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
431GTKSAPITPPPSFAVdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
435APITPPPSFAVPLTNdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
456DKIYGNESPLQKASTdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
466QKASTLSSPFNSKNDdbPTM 3.0;SysPTM 2.0;UniProt;curated18257517; 16381945; 23193290; 19366988; 22817900
Sequence
(Fasta)		MPNEIFPWKI RVDESRGLAG NSGTKKSNHE ALSRLQSPLN SPKLQPIGSP QASRKTSGSG 60
SSAPLYPKWS GALSLASSRA ASPAPSDSFP TFGYSQLGGL ENSSKGSALF NSANSIGTPY 120
LSSRNSNSAN EASAMAFHNV SPPSGAESSS ESKSFSASGK GNKADTSAEP SLDAFNSTQI 180
KAGSTANSNS TPVEPGEDTI PTAIVVKNIP FSLEKDTLLD HFKQLGIPRP YAFNYHYDNG 240
IFRGLAFANF YRPEEAQVVV QTLNGYEING RRLRVEWKRQ LPAAEREKVE KAKKRQAEER 300
RRKQQYKMFE VSFTDQGLNL NDTGTLETYS RLLLFAHQCI PSREITFETT SKDGNLLNAI 360
RIFCLYFDLD YYARPNGEVL KLVVTHPNKK NTSVSQSQPA SPNLRFNMPA PLATRFLQEH 420
SLNGTKSAPI TPPPSFAVPL TNQLRSIDDK IYGNESPLQK ASTLSSPFNS KNDNDASTSA 480
SKQSFGVSHF 491
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0903--Direct protein sequencing
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0694--RNA-binding
Interpro

IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
PROSITE

PS50102--RRM
Pfam

PF00076--RRM_1
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0000166--F:nucleotide binding
GO:0003723--F:RNA binding
GO:0034599--P:cellular response to oxidative stress
GO:2000815--P:regulation of mRNA stability involved in response to oxidative stress