dbPAF Protein Information
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dbPAF ID | dbPAF-0001335 | ||||||||||||||||||||||||||||
Uniprot Accession | O35876; SMN_RAT; O55045; | ||||||||||||||||||||||||||||
Genbank Protein ID | NP_071954.1; | ||||||||||||||||||||||||||||
Genbank Nucleotide ID | NM_022509.1; | ||||||||||||||||||||||||||||
Protein Name | Survival motor neuron protein | ||||||||||||||||||||||||||||
Protein Synonyms/Alias | |||||||||||||||||||||||||||||
Gene Name | Smn1 | ||||||||||||||||||||||||||||
Gene Synonyms/Alias | Smn; | ||||||||||||||||||||||||||||
Organism | Rattus norvegicus(Rat) | ||||||||||||||||||||||||||||
NCBI Taxa ID | 10116 | ||||||||||||||||||||||||||||
Functional Description (View all) |
The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs. Most spliceosomal snRNPs contain a common set of Sm proteins SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF and SNRPG that assemble in a heptameric protein ring on the Sm site of the small nuclear RNA to form the core snRNP. In the cytosol, the Sm proteins SNRPD1, SNRPD2, SNRPE, SNRPF and SNRPG are trapped in an inactive 6S pICln-Sm complex by the chaperone CLNS1A that controls the assembly of the core snRNP. Dissociation by the SMN complex of CLNS1A from the trapped Sm proteins and their transfer to an SMN-Sm complex triggers the assembly of core snRNPs and their transport to the nucleus. Ensures the correct splicing of U12 intron-containing genes that may be important for normal motor and proprioceptive neurons development. May also play a role in the metabolism of small nucleolar ribonucleoprotein (snoRNPs) (By similarity). | ||||||||||||||||||||||||||||
Phosphorylation Sites |
dbPAF PTMs: 6
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Sequence (Fasta) | MAMGSGGGAG SEQEDTVLFR RGTGQSDDSD IWDDTALIKA YDKAVASFKH ALKNGDMCET 60 SDKPKGTARR KPAKKNKNQK KNATAPLKQW KAGDKCSAVW SEDGCVYPAT ITSVDLKRET 120 CVVVYTGYGN KEEQNLSDLL SPTCEVANNT EQNTQENESQ VSTDDSEHSS RSLRSKAHSK 180 SKAAPWTSFL PPPPPVPGAG LGPGKPGLRF SGPPPPPPPP PPFLPCWMPP FPSGPPIIPP 240 PPPISPDCLD DTDALGSMLI SWYMSGYHTG YYMGFRQNKK EGKKCSHTN |
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Keyword | KW-0181--Complete proteome |
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Interpro | |||||||||||||||||||||||||||||
PROSITE | PS50304--TUDOR |
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Pfam | PF06003--SMN |
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Gene Ontology | GO:0015030--C:Cajal body |