dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0001335
Uniprot Accession O35876; SMN_RAT; O55045;
Genbank Protein ID NP_071954.1;
Genbank Nucleotide ID NM_022509.1;
Protein Name Survival motor neuron protein
Protein Synonyms/Alias
Gene Name Smn1
Gene Synonyms/Alias Smn;
Organism Rattus norvegicus(Rat)
NCBI Taxa ID 10116
Functional Description
(View all)
The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs. Most spliceosomal snRNPs contain a common set of Sm proteins SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, SNRPF and SNRPG that assemble in a heptameric protein ring on the Sm site of the small nuclear RNA to form the core snRNP. In the cytosol, the Sm proteins SNRPD1, SNRPD2, SNRPE, SNRPF and SNRPG are trapped in an inactive 6S pICln-Sm complex by the chaperone CLNS1A that controls the assembly of the core snRNP. Dissociation by the SMN complex of CLNS1A from the trapped Sm proteins and their transfer to an SMN-Sm complex triggers the assembly of core snRNPs and their transport to the nucleus. Ensures the correct splicing of U12 intron-containing genes that may be important for normal motor and proprioceptive neurons development. May also play a role in the metabolism of small nucleolar ribonucleoprotein (snoRNPs) (By similarity).
Phosphorylation Sites
dbPAF PTMs: 6
PositionPeptidesSourceReferences ( PMIDs )
5---MAMGSGGGAGSEPhosphoSitePlus22135298
11GSGGGAGSEQEDTVLPhosphoSitePlus;curated22135298; 23712012; 21630457
23TVLFRRGTGQSDDSDPhosphoSitePlus;UniProt;curated22135298; 22673903; 23712012; 21630457; 23984901
26FRRGTGQSDDSDIWDPhosphoSitePlus;UniProt;curated22135298; 22673903; 25532521; 23712012; 21630457; 22276854
29GTGQSDDSDIWDDTAPhosphoSitePlus;UniProt;curated22135298; 22673903; 23712012; 21630457; 22276854; 23984901
35DSDIWDDTALIKAYDPhosphoSitePlus22135298
Sequence
(Fasta)
MAMGSGGGAG SEQEDTVLFR RGTGQSDDSD IWDDTALIKA YDKAVASFKH ALKNGDMCET 60
SDKPKGTARR KPAKKNKNQK KNATAPLKQW KAGDKCSAVW SEDGCVYPAT ITSVDLKRET 120
CVVVYTGYGN KEEQNLSDLL SPTCEVANNT EQNTQENESQ VSTDDSEHSS RSLRSKAHSK 180
SKAAPWTSFL PPPPPVPGAG LGPGKPGLRF SGPPPPPPPP PPFLPCWMPP FPSGPPIIPP 240
PPPISPDCLD DTDALGSMLI SWYMSGYHTG YYMGFRQNKK EGKKCSHTN
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0524--Neurogenesis
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0694--RNA-binding

Interpro

IPR010304--Survival_motor_neuron
IPR002999--Tudor

PROSITE

PS50304--TUDOR

Pfam

PF06003--SMN

Gene Ontology

GO:0015030--C:Cajal body
GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0097504--C:Gemini of coiled bodies
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0032797--C:SMN complex
GO:0034719--C:SMN-Sm protein complex
GO:0005681--C:spliceosomal complex
GO:0030018--C:Z disc
GO:0017134--F:fibroblast growth factor binding
GO:0003723--F:RNA binding
GO:0007399--P:nervous system development
GO:0000245--P:spliceosomal complex assembly
GO:0000387--P:spliceosomal snRNP assembly
GO:0007268--P:synaptic transmission