dbPAF Protein Information

Tag Content
dbPAF ID dbPAF-0000555
Uniprot Accession O14036; SMD2_SCHPO;
Genbank Protein ID NP_594506.1;
Genbank Nucleotide ID NM_001019935.2;
Protein Name Small nuclear ribonucleoprotein Sm D2
Protein Synonyms/Alias
Gene Name smd2
Gene Synonyms/Alias cwf9;SPAC2C4.03c;
Organism Schizosaccharomyces pombe (strain 972 / ATCC 24843)(Fission yeast)
NCBI Taxa ID 284812
Functional Description
(View all)		 Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site (By similarity).
Phosphorylation Sites
 dbPAF PTMs: 1
PositionPeptidesSourceReferences ( PMIDs )
13DKPRSELSEIELARLcurated22817900
Sequence
(Fasta)		MADLVDKPRS ELSEIELARL EEYEFSAGPL SVLQQAVKNH DQVLINCRNN KKLLARVKAF 60
DRHSNMVLEN VKEMWTEKKR TASGKKGKAI NKDRFISKMF LRGDGVVLVV RIPSA 116
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
Interpro

IPR010920--LSM_dom
IPR001163--LSM_dom_euk/arc
IPR027248--Sm_D2
PROSITE
Pfam

PF01423--LSM
Gene Ontology

GO:0005634--C:nucleus
GO:0000974--C:Prp19 complex
GO:0005681--C:spliceosomal complex
GO:0005685--C:U1 snRNP
GO:0005686--C:U2 snRNP
GO:0071004--C:U2-type prespliceosome
GO:0046540--C:U4/U6 x U5 tri-snRNP complex
GO:0000395--P:mRNA 5'-splice site recognition
GO:0045292--P:mRNA cis splicing, via spliceosome