dbPAF Protein Information
Tag | Content | ||||||||
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dbPAF ID | dbPAF-0000479 | ||||||||
Uniprot Accession | O13722; TAF12_SCHPO; | ||||||||
Genbank Protein ID | NP_594289.1; | ||||||||
Genbank Nucleotide ID | NM_001019712.2; | ||||||||
Protein Name | Transcription initiation factor TFIID subunit 12 | ||||||||
Protein Synonyms/Alias | TBP-associated factor 12; | ||||||||
Gene Name | taf12 | ||||||||
Gene Synonyms/Alias | SPAC15A10.02; | ||||||||
Organism | Schizosaccharomyces pombe (strain 972 / ATCC 24843)(Fission yeast) | ||||||||
NCBI Taxa ID | 284812 | ||||||||
Functional Description (View all) |
Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modification (histone acetylation), facilitation of DNA opening and initiation of transcription. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation (gcn5) and deubiquitination (ubp8). SAGA acetylates nucleosomal histone H3 to some extent (to form H3K9ac, H3K14ac, H3K18ac and H3K23ac). SAGA interacts with DNA via upstream activating sequences (UASs). SALSA, an altered form of SAGA, may be involved in positive transcriptional regulation. SLIK is proposed to have partly overlapping functions with SAGA. It preferentially acetylates methylated histone H3 (By similarity). | ||||||||
Phosphorylation Sites |
dbPAF PTMs: 1
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Sequence (Fasta) | MNGQHSSPGT PVQRPSAGPV NQAQFSQQRT NQLTSLLHTM TMYQQLAQNV GLNTPQGQVY 60 LLQAQTIRRQ LQGHAQSGQL PNQQLLQQLQ SNGALQQGTP EPSNTRPRPQ LNAQEQTMLL 120 VRHRQLQTAQ NYLTEMKEAL GRIKNELSTN ERLDTSAREA LVKQESELTV KIAQFTAAIS 180 NGIRSIQQLQ NRQASSANGN NTGTSTPVNA STDTRKSTAS TPQLQQTQAQ ANAPQQRINP 240 ETSSVPETPV GVSAANVSNE STELATSATQ QSGLANNVEK SQTPSYMSAN HLPKVDSKSP 300 IPFSVPPSRA TLTGGYASGS IGLSTPGLSR APHYELDNGN RLLSKRKLHD LLQQIDSEEK 360 IEPEVEELLL EIADEFVESV TNFACRLAKH RKSDTLDVRD VQLHLERNWN IRLPGFASDD 420 IVKSARKTGP TPSYQQKQNA IGTAKSLNKD 451 |
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Keyword | KW-0181--Complete proteome |
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Interpro | |||||||||
PROSITE | |||||||||
Pfam | PF03847--TFIID_20kDa |
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Gene Ontology | GO:0000790--C:nuclear chromatin |