dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0000425
Uniprot Accession O09106; HDAC1_MOUSE; P97476;
Genbank Protein ID NP_032254.1;
Genbank Nucleotide ID NM_008228.2;
Protein Name Histone deacetylase 1
Protein Synonyms/Alias
Gene Name Hdac1
Gene Synonyms/Alias
Organism Mus musculus(Mouse)
NCBI Taxa ID 10090
Functional Description
(View all)
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes. Deacetylates SP proteins, SP1 and SP3, and regulates their function. Component of the BRG1-RB1-HDAC1 complex, which negatively regulates the CREST-mediated transcription in resting neurons. Upon calcium stimulation, HDAC1 is released from the complex and CREBBP is recruited, which facilitates transcriptional activation. Deacetylates TSHZ3 and regulates its transcriptional repressor activity. Deacetylates 'Lys-310' in RELA and thereby inhibits the transcriptional activity of NF-kappa-B. Deacetylates NR1D2 and abrogates the effect of KAT5-mediated relieving of NR1D2 transcription repression activity. Component of a RCOR/GFI/KDM1A/HDAC complex that suppresses, via histone deacetylase (HDAC) recruitment, a number of genes implicated in multilineage blood cell development. Involved in CIART-mediated transcriptional repression of the circadian transcriptional activator: CLOCK-ARNTL/BMAL1 heterodimer. Required for the transcriptional repression of circadian target genes, such as PER1, mediated by the large PER complex or CRY1 through histone deacetylation.
Phosphorylation Sites
dbPAF PTMs: 4
PositionPeptidesSourceReferences ( PMIDs )
393EDAIPEESGDEDEEDdbPTM 3.019131326; 19144319; 19367708; 16381945; 23193290; 17242355;
409DKRISICSSDKRIACdbPTM 3.021183079; 16381945; 23193290
421IACEEEFSDSDEEGEdbPTM 3.019131326; 19144319; 19367708; 16381945; 23193290; 17242355;
423CEEEFSDSDEEGEGGdbPTM 3.019131326; 19144319; 19367708; 16381945; 23193290; 17242355;
Sequence
(Fasta)
MAQTQGTKRK VCYYYDGDVG NYYYGQGHPM KPHRIRMTHN LLLNYGLYRK MEIYRPHKAN 60
AEEMTKYHSD DYIKFLRSIR PDNMSEYSKQ MQRFNVGEDC PVFDGLFEFC QLSTGGSVAS 120
AVKLNKQQTD IAVNWAGGLH HAKKSEASGF CYVNDIVLAI LELLKYHQRV LYIDIDIHHG 180
DGVEEAFYTT DRVMTVSFHK YGEYFPGTGD LRDIGAGKGK YYAVNYPLRD GIDDESYEAI 240
FKPVMSKVME MFQPSAVVLQ CGSDSLSGDR LGCFNLTIKG HAKCVEFVKS FNLPMLMLGG 300
GGYTIRNVAR CWTYETAVAL DTEIPNELPY NDYFEYFGPD FKLHISPSNM TNQNTNEYLE 360
KIKQRLFENL RMLPHAPGVQ MQAIPEDAIP EESGDEDEED PDKRISICSS DKRIACEEEF 420
SDSDEEGEGG RKNSSNFKKA KRVKTEDEKE KDPEEKKEVT EEEKTKEEKP EAKGVKEEVK 480
LA 483
Keyword

KW-0007--Acetylation
KW-0090--Biological rhythms
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0378--Hydrolase
KW-1017--Isopeptide bond
KW-0488--Methylation
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0832--Ubl conjugation

Interpro

IPR000286--His_deacetylse
IPR003084--His_deacetylse_1
IPR023801--His_deacetylse_dom

PROSITE
Pfam

PF00850--Hist_deacetyl

Gene Ontology

GO:0000785--C:chromatin
GO:0005737--C:cytoplasm
GO:0005829--C:cytosol
GO:0000792--C:heterochromatin
GO:0000118--C:histone deacetylase complex
GO:0043025--C:neuronal cell body
GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0016581--C:NuRD complex
GO:0043234--C:protein complex
GO:0016580--C:Sin3 complex
GO:0005667--C:transcription factor complex
GO:0017053--C:transcriptional repressor complex
GO:0033613--F:activating transcription factor binding
GO:0003682--F:chromatin binding
GO:0001047--F:core promoter binding
GO:0019213--F:deacetylase activity
GO:0003677--F:DNA binding
GO:0019899--F:enzyme binding
GO:0004407--F:histone deacetylase activity
GO:0042826--F:histone deacetylase binding
GO:0035851--F:Krueppel-associated box domain binding
GO:0032041--F:NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0051059--F:NF-kappaB binding
GO:0033558--F:protein deacetylase activity
GO:0047485--F:protein N-terminus binding
GO:0070491--F:repressing transcription factor binding
GO:0001103--F:RNA polymerase II repressing transcription factor binding
GO:0001106--F:RNA polymerase II transcription corepressor activity
GO:0003714--F:transcription corepressor activity
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0008134--F:transcription factor binding
GO:0044212--F:transcription regulatory region DNA binding
GO:0000976--F:transcription regulatory region sequence-specific DNA binding
GO:0043044--P:ATP-dependent chromatin remodeling
GO:0016568--P:chromatin modification
GO:0000183--P:chromatin silencing at rDNA
GO:0032922--P:circadian regulation of gene expression
GO:0007623--P:circadian rhythm
GO:0042733--P:embryonic digit morphogenesis
GO:0007492--P:endoderm development
GO:0009913--P:epidermal cell differentiation
GO:0061029--P:eyelid development in camera-type eye
GO:0061198--P:fungiform papilla formation
GO:0060789--P:hair follicle placode formation
GO:0021766--P:hippocampus development
GO:0016575--P:histone deacetylation
GO:0070932--P:histone H3 deacetylation
GO:0070933--P:histone H4 deacetylation
GO:0043922--P:negative regulation by host of viral transcription
GO:0060766--P:negative regulation of androgen receptor signaling pathway
GO:0043066--P:negative regulation of apoptotic process
GO:0090090--P:negative regulation of canonical Wnt signaling pathway
GO:0010629--P:negative regulation of gene expression
GO:0043124--P:negative regulation of I-kappaB kinase/NF-kappaB signaling
GO:2001243--P:negative regulation of intrinsic apoptotic signaling pathway
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0030182--P:neuron differentiation
GO:0042475--P:odontogenesis of dentin-containing tooth
GO:0008284--P:positive regulation of cell proliferation
GO:0048714--P:positive regulation of oligodendrocyte differentiation
GO:0010870--P:positive regulation of receptor biosynthetic process
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0006476--P:protein deacetylation
GO:0006351--P:transcription, DNA-templated