dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0000305
Uniprot Accession O08629; TIF1B_RAT; B2RYN5;
Genbank Protein ID NP_446368.1;
Genbank Nucleotide ID NM_053916.1;
Protein Name Transcription intermediary factor 1-beta
Protein Synonyms/Alias
Gene Name Trim28
Gene Synonyms/Alias Kap1;Tif1b;
Organism Rattus norvegicus(Rat)
NCBI Taxa ID 10116
Functional Description
(View all)
Nuclear corepressor for KRAB domain-containing zinc finger proteins (KRAB-ZFPs). Mediates gene silencing by recruiting CHD3, a subunit of the nucleosome remodeling and deacetylation (NuRD) complex, and SETDB1 (which specifically methylates histone H3 at 'Lys-9' (H3K9me)) to the promoter regions of KRAB target genes. Enhances transcriptional repression by coordinating the increase in H3K9me, the decrease in histone H3 'Lys-9 and 'Lys-14' acetylation (H3K9ac and H3K14ac, respectively) and the disposition of HP1 proteins to silence gene expression. Recruitment of SETDB1 induces heterochromatinization. May play a role as a coactivator for CEBPB and NR3C1 in the transcriptional activation of ORM1. Also corepressor for ERBB4. Inhibits E2F1 activity by stimulating E2F1-HDAC1 complex formation and inhibiting E2F1 acetylation. May serve as a partial backup to prevent E2F1-mediated apoptosis in the absence of RB1. Important regulator of CDKN1A/p21(CIP1). Has E3 SUMO-protein ligase activity toward itself via its PHD-type zinc finger. Specifically sumoylates IRF7, thereby inhibiting its transactivation activity. Ubiquitinates p53/TP53 leading to its proteosomal degradation; the function is enhanced by MAGEC2 and MAGEA2, and possibly MAGEA3 and MAGEA6. Mediates the nuclear localization of KOX1, ZNF268 and ZNF300 transcription factors (By similarity). Interacts (via the RBCC domain) with KOX1 (via the KRAB domain), ZNF268 (via the KRAB domain) and ZNF300 (via the KRAB domain); the interactions increase KOX1, ZNF268 and ZNF300 nuclear localization activities (By similarity).
Phosphorylation Sites
dbPAF PTMs: 36 (View all)
PositionPeptidesSourceReferences ( PMIDs )
24AASAASGSPGSGEGSPhosphoSitePlus;UniProt;curated22135298; 22673903; 23984901
27AASGSPGSGEGSAGGPhosphoSitePlus;UniProt22135298; 22673903
41GEKRPAASSAAAASAcurated21630457
42EKRPAASSAAAASAScurated23712012; 21630457
47ASSAAAASASASSPAcurated23712012; 21630457
49SAAAASASASSPAGGcurated23712012; 21630457
51AAASASASSPAGGGGPhosphoSitePlus;curated22135298; 23712012; 21630457; 23984901
52AASASASSPAGGGGEPhosphoSitePlus;curated22135298; 25532521; 23712012; 21630457
148GSKASSDSQDANQCCcurated21630457
157DANQCCTSCEDNAPAcurated21630457
167DNAPATSYCVECSEPcurated23712012; 21630457
228LFCESCDTLTCRDCQcurated23984901
281KNTKEVRSSIRQVSDcurated23984901
417IVAERPGTNSTGPGPcurated23984901
439GPLSKQGSGSSQPMEcurated23712012; 21630457
441LSKQGSGSSQPMEVQcurated23712012; 21630457
442SKQGSGSSQPMEVQEcurated23712012; 21630457
472HVSGMKRSRSGEGEVdbPTM 3.0;PhosphoSitePlus;curated16641100; 16381945; 23193290; 22135298; 23712012; 21630457;
474SGMKRSRSGEGEVSGdbPTM 3.0;PhosphoSitePlus;UniProt;curated16641100; 16381945; 23193290; 22135298; 22673903; 25532521;
480RSGEGEVSGLMRKVPcurated23712012; 21630457
Sequence
(Fasta)
MAASAAAATA AASAATAASA ASGSPGSGEG SAGGEKRPAA SSAAAASASA SSPAGGGGEA 60
QELLEHCGVC RERLRPERDP RLLPCLHSAC SACLGPATPA AANNSGDGGS AGDGAMVDCP 120
VCKQQCYSKD IVENYFMRDS GSKASSDSQD ANQCCTSCED NAPATSYCVE CSEPLCETCV 180
EAHQRVKYTK DHTVRSTGPA KTRDGERTVY CNVHKHEPLV LFCESCDTLT CRDCQLNAHK 240
DHQYQFLEDA VRNQRKLLAS LVKRLGDKHA TLQKNTKEVR SSIRQVSDVQ KRVQVDVKMA 300
ILQIMKELNK RGRVLVNDAQ KVTEGQQERL ERQHWTMTKI QKHQEHILRF ASWALESDNN 360
TALLLSKKLI YFQLHRALKM IVDPVEPHGE MKFQWDLNAW TKSAEAFGKI VAERPGTNST 420
GPGPMAPPRA PGPLSKQGSG SSQPMEVQEG YGFGTDDPYS SAEPHVSGMK RSRSGEGEVS 480
GLMRKVPRVS LERLDLDLTS DSQPPVFKVF PGSTTEDYNL IVIERGAAAA AAGQAGTVPP 540
GAPGAPPLPG MAIVKEEETE AAIGAPPAAP EGPETKPVLM ALTEGPGAEG PRLASPSGST 600
SSGLEVVAPE VTSAPVSGPG ILDDSATICR VCQKPGDLVM CNQCEFCFHL DCHLPSLQDV 660
PGEEWSCSLC HVLPDLKEED GSLSLDGADS TGVVAKLSPA NQRKCERVLL ALFCHEPCRP 720
LHQLATDSTF SMEQPGGTLD LTLIRARLQE KLSPPYSSPQ EFAQDVGRMF KQFNKLTEDK 780
ADVQSIIGLQ RFFETRMNDA FGDTKFSAVL VEPPPLNLPS AGLSSQELSG PGDGP 836
Keyword

KW-0007--Acetylation
KW-0103--Bromodomain
KW-0164--Citrullination
KW-0181--Complete proteome
KW-1017--Isopeptide bond
KW-0436--Ligase
KW-0479--Metal-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR003649--Bbox_C
IPR001487--Bromodomain
IPR019786--Zinc_finger_PHD-type_CS
IPR000315--Znf_B-box
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50119--ZF_BBOX
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS50089--ZF_RING_2

Pfam

PF00628--PHD
PF00643--zf-B_box
PF14634--zf-RING_5

Gene Ontology

GO:0005719--C:nuclear euchromatin
GO:0005720--C:nuclear heterochromatin
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0090575--C:RNA polymerase II transcription factor complex
GO:0035851--F:Krueppel-associated box domain binding
GO:0016874--F:ligase activity
GO:0044822--F:poly(A) RNA binding
GO:0004672--F:protein kinase activity
GO:0001105--F:RNA polymerase II transcription coactivator activity
GO:0043565--F:sequence-specific DNA binding
GO:0003714--F:transcription corepressor activity
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0060028--P:convergent extension involved in axis elongation
GO:0043045--P:DNA methylation involved in embryo development
GO:0006281--P:DNA repair
GO:0007566--P:embryo implantation
GO:0060669--P:embryonic placenta morphogenesis
GO:0001837--P:epithelial to mesenchymal transition
GO:0045087--P:innate immune response
GO:1901536--P:negative regulation of DNA demethylation
GO:1902187--P:negative regulation of viral release from host cell
GO:0045739--P:positive regulation of DNA repair
GO:0042993--P:positive regulation of transcription factor import into nucleus
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0046777--P:protein autophosphorylation
GO:0051259--P:protein oligomerization
GO:0016925--P:protein sumoylation
GO:2000653--P:regulation of genetic imprinting