dbPAF Protein Information
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dbPAF ID | dbPAF-0000285 | ||||||||||||||||||||||||||||||||||||
Uniprot Accession | O08583; THOC4_MOUSE; Q0VBL5; Q8CBM4; Q9JJW7; | ||||||||||||||||||||||||||||||||||||
Genbank Protein ID | NP_035698.1; | ||||||||||||||||||||||||||||||||||||
Genbank Nucleotide ID | NM_011568.1; | ||||||||||||||||||||||||||||||||||||
Protein Name | THO complex subunit 4 | ||||||||||||||||||||||||||||||||||||
Protein Synonyms/Alias | |||||||||||||||||||||||||||||||||||||
Gene Name | Alyref | ||||||||||||||||||||||||||||||||||||
Gene Synonyms/Alias | Aly;Ref1;Refbp1;THOC4; | ||||||||||||||||||||||||||||||||||||
Organism | Mus musculus(Mouse) | ||||||||||||||||||||||||||||||||||||
NCBI Taxa ID | 10090 | ||||||||||||||||||||||||||||||||||||
Functional Description (View all) |
Export adapter involved in nuclear export of spliced and unspliced mRNA. Binds mRNA which is thought to be transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway). Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export to the cytoplasm. TREX recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. Required for TREX complex assembly and for linking DDX39B to the cap-binding complex (CBC). In conjunction with THOC5 functions in NXF1-NXT1 mediated nuclear export of HSP70 mRNA; both proteins enhance the RNA binding activity of NXF1 and are required for NXF1 localization to the nuclear rim. Involved in the nuclear export of intronless mRNA; proposed to be recruited to intronless mRNA by ATP-bound DDX39B. Involved in transcription elongation and genome stability. | ||||||||||||||||||||||||||||||||||||
Phosphorylation Sites |
dbPAF PTMs: 8
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Sequence (Fasta) | MADKMDMSLD DIIKLNRSQR GGRGGGRGRG RAGSQGGRGG AVQAAARVNR GGGPMRNRPA 60 IARGAAGGGR NRPAPYSRPK QLPDKWQHDL FDSGFGGGAG VETGGKLLVS NLDFGVSDAD 120 IQELFAEFGT LKKAAVHYDR SGRSLGTADV HFERKADALK AMKQYNGVPL DGRPMNIQLV 180 TSQIDTQRRP AQSINRGGMT RNRGSGGFGG GGTRRGTRGG SRGRGRGTGR NSKQQLSAEE 240 LDAQLDAYNA RMDTS 256 |
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Keyword | KW-0002--3D-structure |
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Interpro | IPR025715--FoP_duplication |
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PROSITE | PS50102--RRM |
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Pfam | |||||||||||||||||||||||||||||||||||||
Gene Ontology | GO:0005737--C:cytoplasm |