dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0000285
Uniprot Accession O08583; THOC4_MOUSE; Q0VBL5; Q8CBM4; Q9JJW7;
Genbank Protein ID NP_035698.1;
Genbank Nucleotide ID NM_011568.1;
Protein Name THO complex subunit 4
Protein Synonyms/Alias
Gene Name Alyref
Gene Synonyms/Alias Aly;Ref1;Refbp1;THOC4;
Organism Mus musculus(Mouse)
NCBI Taxa ID 10090
Functional Description
(View all)
Export adapter involved in nuclear export of spliced and unspliced mRNA. Binds mRNA which is thought to be transferred to the NXF1-NXT1 heterodimer for export (TAP/NFX1 pathway). Component of the TREX complex which is thought to couple mRNA transcription, processing and nuclear export, and specifically associates with spliced mRNA and not with unspliced pre-mRNA. TREX is recruited to spliced mRNAs by a transcription-independent mechanism, binds to mRNA upstream of the exon-junction complex (EJC) and is recruited in a splicing- and cap-dependent manner to a region near the 5' end of the mRNA where it functions in mRNA export to the cytoplasm. TREX recruitment occurs via an interaction between ALYREF/THOC4 and the cap-binding protein NCBP1. Required for TREX complex assembly and for linking DDX39B to the cap-binding complex (CBC). In conjunction with THOC5 functions in NXF1-NXT1 mediated nuclear export of HSP70 mRNA; both proteins enhance the RNA binding activity of NXF1 and are required for NXF1 localization to the nuclear rim. Involved in the nuclear export of intronless mRNA; proposed to be recruited to intronless mRNA by ATP-bound DDX39B. Involved in transcription elongation and genome stability.
Phosphorylation Sites
dbPAF PTMs: 8
PositionPeptidesSourceReferences ( PMIDs )
8MADKMDMSLDDIIKLdbPTM 3.0;PhosphoPep 2.0;PhosphoSitePlus;curated21183079; 16381945; 23193290; 19060867; 22135298; 22817900
34RGRGRAGSQGGRGGAdbPTM 3.0;PhosphoSitePlus;curated19737024; 21183079; 16381945; 23193290; 22135298; 23684622;
93WQHDLFDSGFGGGAGPhosphoSitePlus;curated22135298; 25266776
103GGGAGVETGGKLLVSPhosphoSitePlus22135298
193TQRRPAQSINRGGMTdbPTM 3.0;PhosphoSitePlus;curated19854140; 16381945; 23193290; 22135298; 22817900
205GMTRNRGSGGFGGGGcurated25266776; 25338131
232GRGTGRNSKQQLSAEdbPTM 3.0;PhosphoSitePlus;curated21183079; 16381945; 23193290; 22135298; 22817900; 25338131
237RNSKQQLSAEELDAQdbPTM 3.0;Phospho.ELM 9.0;PhosphoPep 2.0;PhosphoSitePlus;curated19144319; 16381945; 23193290; 19854140; 21183079; 21659604;
Sequence
(Fasta)
MADKMDMSLD DIIKLNRSQR GGRGGGRGRG RAGSQGGRGG AVQAAARVNR GGGPMRNRPA 60
IARGAAGGGR NRPAPYSRPK QLPDKWQHDL FDSGFGGGAG VETGGKLLVS NLDFGVSDAD 120
IQELFAEFGT LKKAAVHYDR SGRSLGTADV HFERKADALK AMKQYNGVPL DGRPMNIQLV 180
TSQIDTQRRP AQSINRGGMT RNRGSGGFGG GGTRRGTRGG SRGRGRGTGR NSKQQLSAEE 240
LDAQLDAYNA RMDTS 256
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0025--Alternative splicing
KW-0143--Chaperone
KW-0164--Citrullination
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0488--Methylation
KW-0507--mRNA processing
KW-0508--mRNA splicing
KW-0509--mRNA transport
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0694--RNA-binding
KW-0747--Spliceosome
KW-0813--Transport

Interpro

IPR025715--FoP_duplication
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom

PROSITE

PS50102--RRM

Pfam

PF13865--FoP_duplication
PF00076--RRM_1

Gene Ontology

GO:0005737--C:cytoplasm
GO:0016607--C:nuclear speck
GO:0005634--C:nucleus
GO:0005681--C:spliceosomal complex
GO:0000166--F:nucleotide binding
GO:0003723--F:RNA binding
GO:0003697--F:single-stranded DNA binding
GO:0006397--P:mRNA processing
GO:0051028--P:mRNA transport
GO:0008380--P:RNA splicing