dbPAF Protein Information

Tag Content
dbPAF ID dbPAF-0000211
Uniprot Accession O01864; O01864_CAEEL;
Genbank Protein ID NP_491403.1;
Genbank Nucleotide ID NM_059002.4;
Protein Name NRD (Yeast Nuclear pre-mRNA Down-regulation) homolog
Protein Synonyms/Alias
Gene Name nrd-1
Gene Synonyms/Alias CELE_D1007.7;D1007.7;
Organism Caenorhabditis elegans
NCBI Taxa ID 6239
Functional Description
(View all)
Phosphorylation Sites
 dbPAF PTMs: 9
PositionPeptidesSourceReferences ( PMIDs )
172YKKKPKRSSSSSQPKcurated18806794
180SSSSQPKSRTPTNPHPhospho.ELM 9.0;PHOSIDA;PhosphoPep 2.0;curated19530675; 21081558; 19060867; 18806794
182SSQPKSRTPTNPHPDPhospho.ELM 9.0;PHOSIDA;PhosphoPep 2.0;curated19530675; 21081558; 19060867; 18806794
289LTKDFEYSDDEEEKEPhospho.ELM 9.0;PHOSIDA;PhosphoPep 2.0;curated19530675; 21081558; 19060867; 18806794
469MLNEAAQSPEKKILEPhosphoPep 2.019060867
914PDRRTRRSPSYEREEPhospho.ELM 9.0;PHOSIDA;curated19530675; 21081558; 18806794
916RRTRRSPSYEREEPPPhospho.ELM 9.0;PHOSIDA;curated19530675; 21081558; 18806794
917RTRRSPSYEREEPPVPhospho.ELM 9.0;PHOSIDA19530675; 21081558
927EEPPVKKTSVEEETVcurated18806794
Sequence
(Fasta)		METEVMKSFN NELSSLFDSK NMSKNKIQDI TKAAIKAKSQ YKHVVFSVEK LINKCKPDQR 60
LNVLYVIDSI VRASKHQLKE KDTFGPRFMK QFDKFLMPLL KCGQKEKMRT VRTLNLWMSN 120
KVFKESEIQP LREMCKASGL TIDFEEVELA VKGKQADMSI YSGVYKKKPK RSSSSSQPKS 180
RTPTNPHPDD GLLGAGPSSA LRSVPDIPNF VLSEDYFLGT ISEREMLELV QKFGIDRSGV 240
LSKDKNLLQR ALQIFAGSLS QKVEEVLAEN NRINGSSIQN VLTKDFEYSD DEEEKEKEPQ 300
PEKQKNLPHA QVLLLAQSLL TQPQILAKLA EVLIPQGNPF GLPFPGEHIV PTSSAALTLG 360
APPPNLMALQ QSLPPGFPNQ QLGLPNLSGL NQAQLMNVQN AQNMLQLQQR AAQLQALQGN 420
PNAQRNLLML GNPLLNPFAL QHGVNPMLND LQAAAAAQQQ AMLNEAAQSP EKKILELSGG 480
NSGINNSGDV ERARLREKEK ERESKERRRM GLPPVRIGFT IIASRTLWLK KIPTNIVEND 540
LKQAVESCGE ASRVKVIGNR ACAYITMENR RSANDVVSKM REVSVAKKMV KVYWARSPGM 600
DSDQFSDLWD SNRGVLEIPY EKLPLDLVAL CEGAMLDIES LPIEKKLLYK ETGETVISIP 660
PPNIQPPVPH PPPMGFPFQH QLTQLPGQPR PAGLPPGVPP MFNLNAPPPP GIPGYPPAPP 720
PPGVGPPPPQ GIPPMGFDPN KPPPPMFQQG FNAGAPPPPF GRGAGPMSSF PPPPRGGMHH 780
MPPPPSFRGG RGGHGGPPPP HFDRRGGGGP PFRPENGRGR LLDQSEMWNR EQREMRGGGG 840
AGRDGGREHR DYDRDRSQID RRRQDDMGAR RRSRWGDDDR RDDDRRDDRR DDRRESRRRS 900
PRSPRSPDRR TRRSPSYERE EPPVKKTSVE EETVSSTTLD ELKPSVEPTP VPAPIPAPAP 960
ELKAAEEPVK IVAEHHEDQT DEVPMDLE 989
Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR006569--CID_dom
IPR008942--ENTH_VHS
IPR012677--Nucleotide-bd_a/b_plait
IPR006903--RNA_pol_II-bd
IPR000504--RRM_dom
PROSITE

PS51391--CID
PS50102--RRM
Pfam

PF04818--CTD_bind
PF00076--RRM_1
Gene Ontology

GO:0003676--F:nucleic acid binding
GO:0000166--F:nucleotide binding