dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0000153
Uniprot Accession O00746; NDKM_HUMAN; A2IDD0; Q5U0M9;
Genbank Protein ID NP_001273362.1; NP_001273364.1; NP_001273365.1; NP_001273367.1; NP_001273368.1; NP_001273369.1; NP_005000.1;
Genbank Nucleotide ID NM_001286433.1; NM_001286435.1; NM_001286436.1; NM_001286438.1; NM_001286439.1; NM_001286440.1; NM_005009.2;
Protein Name Nucleoside diphosphate kinase, mitochondrial
Protein Synonyms/Alias
Gene Name NME4
Gene Synonyms/Alias NM23D;
Organism Homo sapiens(Human)
NCBI Taxa ID 9606
Functional Description
(View all)
Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate. Through the catalyzed exchange of gamma-phosphate between di- and triphosphonucleosides participates in regulation of intracellular nucleotide homeostasis (PubMed:10799505). Binds to anionic phospholipids, predominantly to cardiolipin; the binding inhibits its phosphotransfer activity (PubMed:18635542, PubMed:23150663). Acts as mitochondria-specific NDK; its association with cardiolipin-containing mitochondrial inner membrane is coupled to respiration suggesting that ADP locally regenerated in the mitochondrion innermembrane space by its activity is directly taken up via ANT ADP/ATP translocase into the matrix space to stimulate respiratory ATP regeneration (PubMed:18635542). Proposed to increase GTP-loading on dynamin-related GTPase OPA1 in mitochondria (PubMed:24970086). In vitro can induce liposome cross-linking suggesting that it can cross-link inner and outer membranes to form contact sites, and promotes intermembrane migration of anionic phosphoplipids. Promotes the redistribution of cardiolipin between the mitochondrial inner membrane and outer membrane which is implicated in pro-apoptotic signaling (PubMed:18635542, PubMed:17028143, PubMed:23150663).
Phosphorylation Sites
dbPAF PTMs: 7
PositionPeptidesSourceReferences ( PMIDs )
30SLLVRHGSGGPSWTRPhosphoSitePlus22135298
36GSGGPSWTRERTLVAPhosphoSitePlus22135298
100FYPALIRYMSSGPVVPhosphoSitePlus22135298
102PALIRYMSSGPVVAMPhosphoSitePlus22135298
114VAMVWEGYNVVRASRPhosphoSitePlus22135298
127SRAMIGHTDSAEAAPdbPTM 3.0;HPRD 9;curated20068231; 16381945; 23193290; 18988627
153SRNVIHASDSVEGAQcurated25850435
Sequence
(Fasta)
MGGLFWRSAL RGLRCGPRAP GPSLLVRHGS GGPSWTRERT LVAVKPDGVQ RRLVGDVIQR 60
FERRGFTLVG MKMLQAPESV LAEHYQDLRR KPFYPALIRY MSSGPVVAMV WEGYNVVRAS 120
RAMIGHTDSA EAAPGTIRGD FSVHISRNVI HASDSVEGAQ REIQLWFQSS ELVSWADGGQ 180
HSSIHPA 188
Keyword

KW-0002--3D-structure
KW-0025--Alternative splicing
KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0903--Direct protein sequencing
KW-0418--Kinase
KW-0445--Lipid transport
KW-0446--Lipid-binding
KW-0460--Magnesium
KW-0472--Membrane
KW-0479--Metal-binding
KW-0496--Mitochondrion
KW-0546--Nucleotide metabolism
KW-0547--Nucleotide-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0809--Transit peptide
KW-0813--Transport

Interpro

IPR001564--Nucleoside_diP_kinase
IPR023005--Nucleoside_diP_kinase_AS

PROSITE

PS00469--NDP_KINASES

Pfam

PF00334--NDK

Gene Ontology

GO:0005829--C:cytosol
GO:0005622--C:intracellular
GO:0005743--C:mitochondrial inner membrane
GO:0005758--C:mitochondrial intermembrane space
GO:0005759--C:mitochondrial matrix
GO:0005739--C:mitochondrion
GO:0005524--F:ATP binding
GO:0008289--F:lipid binding
GO:0046872--F:metal ion binding
GO:0004550--F:nucleoside diphosphate kinase activity
GO:0006241--P:CTP biosynthetic process
GO:0006183--P:GTP biosynthetic process
GO:0006869--P:lipid transport
GO:0015949--P:nucleobase-containing small molecule interconversion
GO:0055086--P:nucleobase-containing small molecule metabolic process
GO:0009116--P:nucleoside metabolic process
GO:0009142--P:nucleoside triphosphate biosynthetic process
GO:0006163--P:purine nucleotide metabolic process
GO:0006220--P:pyrimidine nucleotide metabolic process
GO:0042981--P:regulation of apoptotic process
GO:0044281--P:small molecule metabolic process
GO:0006228--P:UTP biosynthetic process