dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0000067
Uniprot Accession O00327; BMAL1_HUMAN; A2I2N6; A8K645; B5ME11; B7WPG7; D3DQW6; O00313; O00314; O00315; O00316; O00317; Q4G136; Q8IUT4; Q99631; Q99649;
Genbank Protein ID NP_001025443.1; NP_001025444.1; NP_001169.3; NP_001284648.1; NP_001284651.1; NP_001284653.1; XP_011518408.1; XP_011518409.1; XP_011518414.1; XP_011518415.1;
Genbank Nucleotide ID NM_001030272.2; NM_001030273.2; NM_001178.5; NM_001297719.1; NM_001297722.1; NM_001297724.1; XM_011520106.1; XM_011520107.1; XM_011520112.1; XM_011520113.1;
Protein Name Aryl hydrocarbon receptor nuclear translocator-like protein 1
Protein Synonyms/Alias Basic-helix-loop-helix-PAS protein MOP3;Brain and muscle ARNT-like 1;Class E basic helix-loop-helix protein 5;bHLHe5;Member of PAS protein 3;PAS domain-containing protein 3;bHLH-PAS protein JAP3;
Gene Name ARNTL
Gene Synonyms/Alias BHLHE5;BMAL1;MOP3;PASD3;
Organism Homo sapiens(Human)
NCBI Taxa ID 9606
Functional Description
(View all)
Transcriptional activator which forms a core component of the circadian clock. The circadian clock, an internal time-keeping system, regulates various physiological processes through the generation of approximately 24 hour circadian rhythms in gene expression, which are translated into rhythms in metabolism and behavior. It is derived from the Latin roots 'circa' (about) and 'diem' (day) and acts as an important regulator of a wide array of physiological functions including metabolism, sleep, body temperature, blood pressure, endocrine, immune, cardiovascular, and renal function. Consists of two major components: the central clock, residing in the suprachiasmatic nucleus (SCN) of the brain, and the peripheral clocks that are present in nearly every tissue and organ system. Both the central and peripheral clocks can be reset by environmental cues, also known as Zeitgebers (German for 'timegivers'). The predominant Zeitgeber for the central clock is light, which is sensed by retina and signals directly to the SCN. The central clock entrains the peripheral clocks through neuronal and hormonal signals, body temperature and feeding-related cues, aligning all clocks with the external light/dark cycle. Circadian rhythms allow an organism to achieve temporal homeostasis with its environment at the molecular level by regulating gene expression to create a peak of protein expression once every 24 hours to control when a particular physiological process is most active with respect to the solar day. Transcription and translation of core clock components (CLOCK, NPAS2, ARNTL/BMAL1, ARNTL2/BMAL2, PER1, PER2, PER3, CRY1 and CRY2) plays a critical role in rhythm generation, whereas delays imposed by post-translational modifications (PTMs) are important for determining the period (tau) of the rhythms (tau refers to the period of a rhythm and is the length, in time, of one complete cycle). A diurnal rhythm is synchronized with the day/night cycle, while the ultradian and infradian rhythms have a period shorter and longer than 24 hours, respectively. Disruptions in the circadian rhythms contribute to the pathology of cardiovascular diseases, cancer, metabolic syndromes and aging. A transcription/translation feedback loop (TTFL) forms the core of the molecular circadian clock mechanism. Transcription factors, CLOCK or NPAS2 and ARNTL/BMAL1 or ARNTL2/BMAL2, form the positive limb of the feedback loop, act in the form of a heterodimer and activate the transcription of core clock genes and clock-controlled genes (involved in key metabolic processes), harboring E-box elements (5'-CACGTG-3') within their promoters. The core clock genes: PER1/2/3 and CRY1/2 which are transcriptional repressors form the negative limb of the feedback loop and interact with the CLOCK|NPAS2-ARNTL/BMAL1|ARNTL2/BMAL2 heterodimer inhibiting its activity and thereby negatively regulating their own expression. This heterodimer also activates nuclear receptors NR1D1/2 and RORA/B/G, which form a second feedback loop and which activate and repress ARNTL/BMAL1 transcription, respectively. ARNTL/BMAL1 positively regulates myogenesis and negatively regulates adipogenesis via the transcriptional control of the genes of the canonical Wnt signaling pathway. Plays a role in normal pancreatic beta-cell function; regulates glucose-stimulated insulin secretion via the regulation of antioxidant genes NFE2L2/NRF2 and its targets SESN2, PRDX3, CCLC and CCLM. Negatively regulates the mTORC1 signaling pathway; regulates the expression of MTOR and DEPTOR. Controls diurnal oscillations of Ly6C inflammatory monocytes; rhythmic recruitment of the PRC2 complex imparts diurnal variation to chemokine expression that is necessary to sustain Ly6C monocyte rhythms. Regulates the expression of HSD3B2, STAR, PTGS2, CYP11A1, CYP19A1 and LHCGR in the ovary and also the genes involved in hair growth. Plays an important role in adult hippocampal neurogenesis by regulating the timely entry of neural stem/progenitor cells (NSPCs) into the cell cycle and the number of cell divisions that take place prior to cell-cycle exit. Regulates the circadian expression of CIART and KLF11. The CLOCK-ARNTL/BMAL1 heterodimer regulates the circadian expression of SERPINE1/PAI1, VWF, B3, CCRN4L/NOC, NAMPT, DBP, MYOD1, PPARGC1A, PPARGC1B, SIRT1, GYS2, F7, NGFR, GNRHR, BHLHE40/DEC1, ATF4, MTA1, KLF10 and also genes implicated in glucose and lipid metabolism. Represses glucocorticoid receptor NR3C1/GR-induced transcriptional activity by reducing the association of NR3C1/GR to glucocorticoid response elements (GREs) via the acetylation of multiple lysine residues located in its hinge region. Promotes rhythmic chromatin opening, regulating the DNA accessibility of other transcription factors. The NPAS2-ARNTL/BMAL1 heterodimer positively regulates the expression of MAOA, F7 and LDHA and modulates the circadian rhythm of daytime contrast sensitivity by regulating the rhythmic expression of adenylate cyclase type 1 (ADCY1) in the retina.
Phosphorylation Sites
dbPAF PTMs: 18
PositionPeptidesSourceReferences ( PMIDs )
17STISDFMSPGPTDLLdbPTM 3.0;PhosphoSitePlus;curated20049328; 16381945; 23193290; 22135298; 22817900
21DFMSPGPTDLLSSSLdbPTM 3.0;PhosphoSitePlus;curated20049328; 16381945; 23193290; 22135298; 22817900
42CNRKRKGSSTDYQESPhosphoSitePlus;curated22135298; 25627689; 23898821
43NRKRKGSSTDYQESMcurated25627689
44RKRKGSSTDYQESMDPhosphoSitePlus22135298
49SSTDYQESMDTDKDDPhosphoSitePlus22135298
52DYQESMDTDKDDPHGPhosphoSitePlus22135298
63DPHGRLEYTEHQGRIPhosphoSitePlus22135298
78KNAREAHSQIEKRRRdbPTM 3.0;HPRD 9;PhosphoSitePlus18077418; 16381945; 23193290; 18988627; 22135298
224ERLIDAKTGLPVKTDPhosphoSitePlus22135298
284KSFCTIHSTGYLKSWPhosphoSitePlus22135298
294YLKSWPPTKMGLDEDPhosphoSitePlus22135298
400LQTREKITTNCYKFKPhosphoSitePlus22135298
401QTREKITTNCYKFKIPhosphoSitePlus22135298
404EKITTNCYKFKIKDGPhosphoSitePlus22135298
520SPSSCGSSPLNITSTPhosphoSitePlus22135298
527SPLNITSTPPPDASSPhosphoSitePlus22135298
592DNDQGSSSPSNDEAAPhosphoSitePlus22135298
Sequence
(Fasta)
MADQRMDISS TISDFMSPGP TDLLSSSLGT SGVDCNRKRK GSSTDYQESM DTDKDDPHGR 60
LEYTEHQGRI KNAREAHSQI EKRRRDKMNS FIDELASLVP TCNAMSRKLD KLTVLRMAVQ 120
HMKTLRGATN PYTEANYKPT FLSDDELKHL ILRAADGFLF VVGCDRGKIL FVSESVFKIL 180
NYSQNDLIGQ SLFDYLHPKD IAKVKEQLSS SDTAPRERLI DAKTGLPVKT DITPGPSRLC 240
SGARRSFFCR MKCNRPSVKV EDKDFPSTCS KKKADRKSFC TIHSTGYLKS WPPTKMGLDE 300
DNEPDNEGCN LSCLVAIGRL HSHVVPQPVN GEIRVKSMEY VSRHAIDGKF VFVDQRATAI 360
LAYLPQELLG TSCYEYFHQD DIGHLAECHR QVLQTREKIT TNCYKFKIKD GSFITLRSRW 420
FSFMNPWTKE VEYIVSTNTV VLANVLEGGD PTFPQLTASP HSMDSMLPSG EGGPKRTHPT 480
VPGIPGGTRA GAGKIGRMIA EEIMEIHRIR GSSPSSCGSS PLNITSTPPP DASSPGGKKI 540
LNGGTPDIPS SGLLSGQAQE NPGYPYSDSS SILGENPHIG IDMIDNDQGS SSPSNDEAAM 600
AVIMSLLEAD AGLGGPVDFS DLPWPL 627
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0010--Activator
KW-0025--Alternative splicing
KW-0090--Biological rhythms
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0238--DNA-binding
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0832--Ubl conjugation

Interpro

IPR011598--bHLH_dom
IPR001067--Nuc_translocat
IPR001610--PAC
IPR000014--PAS
IPR013767--PAS_fold

PROSITE

PS50888--BHLH
PS50112--PAS

Pfam

PF00010--HLH
PF00989--PAS

Gene Ontology

GO:0033391--C:chromatoid body
GO:0043231--C:intracellular membrane-bounded organelle
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0016605--C:PML body
GO:0005667--C:transcription factor complex
GO:0017162--F:aryl hydrocarbon receptor binding
GO:0001047--F:core promoter binding
GO:0003677--F:DNA binding
GO:0070888--F:E-box binding
GO:0051879--F:Hsp90 protein binding
GO:0070491--F:repressing transcription factor binding
GO:0043565--F:sequence-specific DNA binding
GO:0000982--F:transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0000976--F:transcription regulatory region sequence-specific DNA binding
GO:0032922--P:circadian regulation of gene expression
GO:0007623--P:circadian rhythm
GO:0045599--P:negative regulation of fat cell differentiation
GO:2000323--P:negative regulation of glucocorticoid receptor signaling pathway
GO:0032007--P:negative regulation of TOR signaling
GO:0045892--P:negative regulation of transcription, DNA-templated
GO:0090403--P:oxidative stress-induced premature senescence
GO:0090263--P:positive regulation of canonical Wnt signaling pathway
GO:0042753--P:positive regulation of circadian rhythm
GO:2001016--P:positive regulation of skeletal muscle cell differentiation
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051726--P:regulation of cell cycle
GO:2000772--P:regulation of cellular senescence
GO:0042634--P:regulation of hair cycle
GO:0050796--P:regulation of insulin secretion
GO:0050767--P:regulation of neurogenesis
GO:0006355--P:regulation of transcription, DNA-templated
GO:2000074--P:regulation of type B pancreatic cell development
GO:0051775--P:response to redox state
GO:0007283--P:spermatogenesis
GO:0006351--P:transcription, DNA-templated