dbPAF Protein Information


Tag Content
dbPAF ID dbPAF-0000052
Uniprot Accession O00267; SPT5H_HUMAN; O43279; Q59G52; Q99639;
Genbank Protein ID NP_001104490.1; NP_001124296.1; NP_001124297.1; NP_003160.2; XP_005259240.1; XP_006723400.1;
Genbank Nucleotide ID NM_001111020.2; NM_001130824.1; NM_001130825.1; NM_003169.3; XM_005259183.1; XM_006723337.1;
Protein Name Transcription elongation factor SPT5
Protein Synonyms/Alias
Gene Name SUPT5H
Gene Synonyms/Alias SPT5;SPT5H;
Organism Homo sapiens(Human)
NCBI Taxa ID 9606
Functional Description
(View all)
Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates mRNA processing and transcription elongation by RNA polymerase II. DSIF positively regulates mRNA capping by stimulating the mRNA guanylyltransferase activity of RNGTT/CAP1A. DSIF also acts cooperatively with the negative elongation factor complex (NELF complex) to enhance transcriptional pausing at sites proximal to the promoter. Transcriptional pausing may facilitate the assembly of an elongation competent RNA polymerase II complex. DSIF and NELF promote pausing by inhibition of the transcription elongation factor TFIIS/S-II. TFIIS/S-II binds to RNA polymerase II at transcription pause sites and stimulates the weak intrinsic nuclease activity of the enzyme. Cleavage of blocked transcripts by RNA polymerase II promotes the resumption of transcription from the new 3' terminus and may allow repeated attempts at transcription through natural pause sites. DSIF can also positively regulate transcriptional elongation and is required for the efficient activation of transcriptional elongation by the HIV-1 nuclear transcriptional activator, Tat. DSIF acts to suppress transcriptional pausing in transcripts derived from the HIV-1 LTR and blocks premature release of HIV-1 transcripts at terminator sequences.
Phosphorylation Sites
dbPAF PTMs: 62 (View all)
PositionPeptidesSourceReferences ( PMIDs )
10DSEDSNFSEEEDSERcurated20873877
19EEDSERSSDGEEAEVdbPTM 3.0;Phospho.ELM 9.0;PhosphoPep 2.015302935; 16381945; 23193290; 19060867
32EVDEERRSAAGSEKEdbPTM 3.0;HPRD 9;PhosphoSitePlus;curated18452278; 16381945; 23193290; 18988627; 22135298; 25850435;
36ERRSAAGSEKEEEPEdbPTM 3.0;HPRD 9;PhosphoSitePlus;curated18452278; 16381945; 23193290; 18988627; 22135298; 25850435;
86EADVDDEYEDEDQWEPhosphoSitePlus22135298
108EKEEIEASNIDNVVLPhosphoSitePlus;curated22135298; 20873877
120VVLDEDRSGARRLQNPhosphoSitePlus;curated22135298; 25627689
140REEELGEYYMKKYAKdbPTM 3.0;PhosphoSitePlus17360941; 20562096; 16381945; 23193290; 22135298
141EEELGEYYMKKYAKSPhosphoSitePlus22135298
148YMKKYAKSSVGETVYcurated25627689
149MKKYAKSSVGETVYGcurated25627689
153AKSSVGETVYGGSDEcurated25627689
155SSVGETVYGGSDELSPhosphoSitePlus22135298
158GETVYGGSDELSDDIPhosphoSitePlus;curated22135298; 25627689
208IAYQFTDTPLQIKSVPhosphoSitePlus22135298
230GYIYVEAYKQTHVKQPhosphoSitePlus22135298
295DDIAQVDYVEPSQNTdbPTM 3.0;PhosphoSitePlus17360941; 16381945; 23193290; 22135298
375RKGFLFKSFAMSAVIdbPTM 3.0;HPRD 9;PHOSIDA;PhosphoSitePlus;curated20068231; 16381945; 23193290; 18988627; 21081558; 22135298
557IVRLERETFQVLNMYPHOSIDA21081558
564TFQVLNMYGKVVTVRPHOSIDA21081558
Sequence
(Fasta)
MSDSEDSNFS EEEDSERSSD GEEAEVDEER RSAAGSEKEE EPEDEEEEEE EEEYDEEEEE 60
EDDDRPPKKP RHGGFILDEA DVDDEYEDED QWEDGAEDIL EKEEIEASNI DNVVLDEDRS 120
GARRLQNLWR DQREEELGEY YMKKYAKSSV GETVYGGSDE LSDDITQQQL LPGVKDPNLW 180
TVKCKIGEER ATAISLMRKF IAYQFTDTPL QIKSVVAPEH VKGYIYVEAY KQTHVKQAIE 240
GVGNLRLGYW NQQMVPIKEM TDVLKVVKEV ANLKPKSWVR LKRGIYKDDI AQVDYVEPSQ 300
NTISLKMIPR IDYDRIKARM SLKDWFAKRK KFKRPPQRLF DAEKIRSLGG DVASDGDFLI 360
FEGNRYSRKG FLFKSFAMSA VITEGVKPTL SELEKFEDQP EGIDLEVVTE STGKEREHNF 420
QPGDNVEVCE GELINLQGKI LSVDGNKITI MPKHEDLKDM LEFPAQELRK YFKMGDHVKV 480
IAGRFEGDTG LIVRVEENFV ILFSDLTMHE LKVLPRDLQL CSETASGVDV GGQHEWGELV 540
QLDPQTVGVI VRLERETFQV LNMYGKVVTV RHQAVTRKKD NRFAVALDSE QNNIHVKDIV 600
KVIDGPHSGR EGEIRHLFRS FAFLHCKKLV ENGGMFVCKT RHLVLAGGSK PRDVTNFTVG 660
GFAPMSPRIS SPMHPSAGGQ RGGFGSPGGG SGGMSRGRGR RDNELIGQTV RISQGPYKGY 720
IGVVKDATES TARVELHSTC QTISVDRQRL TTVGSRRPGG MTSTYGRTPM YGSQTPMYGS 780
GSRTPMYGSQ TPLQDGSRTP HYGSQTPLHD GSRTPAQSGA WDPNNPNTPS RAEEEYEYAF 840
DDEPTPSPQA YGGTPNPQTP GYPDPSSPQV NPQYNPQTPG TPAMYNTDQF SPYAAPSPQG 900
SYQPSPSPQS YHQVAPSPAG YQNTHSPASY HPTPSPMAYQ ASPSPSPVGY SPMTPGAPSP 960
GGYNPHTPGS GIEQNSSDWV TTDIQVKVRD TYLDTQVVGQ TGVIRSVTGG MCSVYLKDSE 1020
KVVSISSEHL EPITPTKNNK VKVILGEDRE ATGVLLSIDG EDGIVRMDLD EQLKILNLRF 1080
LGKLLEA 1088
Keyword

KW-0002--3D-structure
KW-0007--Acetylation
KW-0010--Activator
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0903--Direct protein sequencing
KW-1017--Isopeptide bond
KW-0488--Methylation
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0832--Ubl conjugation

Interpro

IPR005824--KOW
IPR006645--NGN_dom
IPR024945--Spt5_C_dom
IPR022581--Spt5_N
IPR017071--TF_Spt5
IPR005100--TF_Spt5_NGN-domain
IPR008991--Translation_prot_SH3-like

PROSITE
Pfam

PF00467--KOW
PF03439--Spt5-NGN
PF11942--Spt5_N

Gene Ontology

GO:0032044--C:DSIF complex
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0003682--F:chromatin binding
GO:0019899--F:enzyme binding
GO:0044822--F:poly(A) RNA binding
GO:0046982--F:protein heterodimerization activity
GO:0006370--P:7-methylguanosine mRNA capping
GO:0007049--P:cell cycle
GO:0006338--P:chromatin remodeling
GO:0006354--P:DNA-templated transcription, elongation
GO:0010467--P:gene expression
GO:0032785--P:negative regulation of DNA-templated transcription, elongation
GO:1900364--P:negative regulation of mRNA polyadenylation
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0032786--P:positive regulation of DNA-templated transcription, elongation
GO:0016239--P:positive regulation of macroautophagy
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0050434--P:positive regulation of viral transcription
GO:0010033--P:response to organic substance
GO:0039692--P:single stranded viral RNA replication via double stranded DNA intermediate
GO:0006368--P:transcription elongation from RNA polymerase II promoter
GO:0006366--P:transcription from RNA polymerase II promoter
GO:0016032--P:viral process